PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s0670.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 753aa MW: 84477 Da PI: 5.9338

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s0670.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	384.6	1.2e-117	379	750	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+av+++d + a++lL++++++asp gd +qRla++f+ +L+arla+++s++yk l++++ts ++ l+a++l+ ++P+ Kaladp0011s0670.1.p 379 LRTLLVHCAQAVAADDSRSANELLKQIRQHASPFGDGNQRLAHCFADGLEARLAGTGSQIYKGLTSKKTS---AADILKAYHLYLAACPF 465 6789***********************************************************99999...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s++ N++Il+ ++++ rvHiiDf+i +G+QWp++lq ++ R++gpp++RiTgv+ p++g +e++eetg+r+a +Ae++g+pfef Kaladp0011s0670.1.p 466 RKISNFFSNKTILNVAANSMRVHIIDFGILYGFQWPTFLQRISLRAGGPPKVRITGVDFPQPGfrPAERVEETGRRIAGYAERFGIPFEF 555 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+ +ak++e++++e+L+++++E l+Vn+ ++ ++l+de+v+ +s+r+ vL+lv+++ P+v+++ + +n++ F++rf eal ++salf Kaladp0011s0670.1.p 556 NA-IAKKWETIKIEDLKIDQDELLIVNSLYRFQNLHDETVAANSARSIVLNLVRKITPEVFILGIVNGAYNAPFFVTRFREALFHFSALF 644 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+le+++pre er+ +Ere++gre+ nv+aceg er+er et+++W+ r +aGF+++p++ ++ k a+ ++ + + + v+e+ +++ Kaladp0011s0670.1.p 645 DMLETNVPREYLERMLIEREIFGREALNVIACEGWERIERPETYKQWQVRQLRAGFRQLPVDRDIIKRAEDRVKSSYHKDFVVDEDGQWF 734 *************************************************************************888****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r+++++S+W+ Kaladp0011s0670.1.p 735 LQGWKGRTIYALSSWK 750 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.126	353	730	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-115	379	750	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MDPRLRGGSM ASTYGYNHQS ASSGLDRCLI GGDRYDGVLW NEHRQFRDFH HFENDQTPST 60 SSVASVPEEE SPEEDFSDVV LKYINQMLME EDMEDKTCML QDSLDLQAAE KPFYEALGEK 120 YPPSPSLQQL PETFCYRGCQ SPDAVSALNY NIADATYSGG GYMVDAGSIN GYHGNYDYIQ 180 EEVIPVYTTT SQSSLTCSNG VFAMLNGMVD SPISTLQISD FCKESASVWQ FKKGVEEANK 240 FLPASANLLV NLEGRASTYL ESESETNGAL VKEETKNDGE YVSYGSRGRK HLHREADESE 300 ERSSKQAAVY VESNVKSEIF DEVLLCSKGS TTSPLATLRE SLQNGTSKAS QQNGLVKAAV 360 STGKGRGRKQ NGKKEVVDLR TLLVHCAQAV AADDSRSANE LLKQIRQHAS PFGDGNQRLA 420 HCFADGLEAR LAGTGSQIYK GLTSKKTSAA DILKAYHLYL AACPFRKISN FFSNKTILNV 480 AANSMRVHII DFGILYGFQW PTFLQRISLR AGGPPKVRIT GVDFPQPGFR PAERVEETGR 540 RIAGYAERFG IPFEFNAIAK KWETIKIEDL KIDQDELLIV NSLYRFQNLH DETVAANSAR 600 SIVLNLVRKI TPEVFILGIV NGAYNAPFFV TRFREALFHF SALFDMLETN VPREYLERML 660 IEREIFGREA LNVIACEGWE RIERPETYKQ WQVRQLRAGF RQLPVDRDII KRAEDRVKSS 720 YHKDFVVDED GQWFLQGWKG RTIYALSSWK PV*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MDPRLRGGSM ASTYGYNHQS ASSGLDRCLI GGDRYDGVLW NEHRQFRDFH HFENDQTPST  60
SSVASVPEEE SPEEDFSDVV LKYINQMLME EDMEDKTCML QDSLDLQAAE KPFYEALGEK  120
YPPSPSLQQL PETFCYRGCQ SPDAVSALNY NIADATYSGG GYMVDAGSIN GYHGNYDYIQ  180
EEVIPVYTTT SQSSLTCSNG VFAMLNGMVD SPISTLQISD FCKESASVWQ FKKGVEEANK  240
FLPASANLLV NLEGRASTYL ESESETNGAL VKEETKNDGE YVSYGSRGRK HLHREADESE  300
ERSSKQAAVY VESNVKSEIF DEVLLCSKGS TTSPLATLRE SLQNGTSKAS QQNGLVKAAV  360
STGKGRGRKQ NGKKEVVDLR TLLVHCAQAV AADDSRSANE LLKQIRQHAS PFGDGNQRLA  420
HCFADGLEAR LAGTGSQIYK GLTSKKTSAA DILKAYHLYL AACPFRKISN FFSNKTILNV  480
AANSMRVHII DFGILYGFQW PTFLQRISLR AGGPPKVRIT GVDFPQPGFR PAERVEETGR  540
RIAGYAERFG IPFEFNAIAK KWETIKIEDL KIDQDELLIV NSLYRFQNLH DETVAANSAR  600
SIVLNLVRKI TPEVFILGIV NGAYNAPFFV TRFREALFHF SALFDMLETN VPREYLERML  660
IEREIFGREA LNVIACEGWE RIERPETYKQ WQVRQLRAGF RQLPVDRDII KRAEDRVKSS  720
YHKDFVVDED GQWFLQGWKG RTIYALSSWK PV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-49	385	751	25	380	Protein SCARECROW
5b3h_A	5e-49	385	751	24	379	Protein SCARECROW
5b3h_D	5e-49	385	751	24	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021825531.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A251NVY7	0.0	A0A251NVY7_PRUPE; Uncharacterized protein
STRING	XP_008240788.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kaladp0011s0670.1.p