PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0256.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 538aa    MW: 60555.4 Da    PI: 5.1064
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0256.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4418.3e-1351665371374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+e+Ll+ A+a+s++dl  a++l+++l++++s +g+pmqRl ay++e+L arl++s+s+lyk+l+++e     s++ l++++l++ev+P+
  Kaladp0008s0256.2.p 166 LREVLLASAKAMSENDLVTAEWLMSQLNHMVSVSGEPMQRLGAYMLEGLIARLSSSGSSLYKSLRCKEPV--ASANLLSYMHLLYEVCPY 253
                          6899***************************************************************997..6999************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea+  e+r+HiiDf+i qG QW +L+qaL+++p gpp++RiTg+++p s+  +   l  +g+rL+kfAe+++vpfef
  Kaladp0008s0256.2.p 254 FKFGYMSANGAIAEAMRDENRIHIIDFQIAQGSQWFPLIQALSAQPCGPPQIRITGIDDPVSSyaRGGGLDIVGKRLSKFAESCNVPFEF 343
                          ************************************************************99999999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                             ++ + +d+e+e+Lr+++gEa+aVn++++lh+++desv ++++rd++L+lvk lsPkvv++ve+e+++n+++F+ rfle+l+yy+a+f
  Kaladp0008s0256.2.p 344 CS-ATVSGSDIEYESLRIRHGEAIAVNFAFMLHHMPDESVGTQNHRDRLLRLVKCLSPKVVTLVEHESNTNTSPFFPRFLETLDYYAAIF 432
                          **.8999*********************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++a+lpre+eeri+vE+++l+reivn+vacegaer+erhe l kW++r+ ++GF+p+pls+ +++++k+ll+++ +  yr+ee++g+l
  Kaladp0008s0256.2.p 433 ESIDATLPREHEERINVEQHCLAREIVNIVACEGAERVERHELLTKWKSRFVMSGFSPYPLSSVVNATIKTLLENYCD-KYRLEEKDGAL 521
                          ****************************************************************************95.5********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW +r+Lv+ SaWr
  Kaladp0008s0256.2.p 522 YLGWLNRALVASSAWR 537
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.569140518IPR005202Transcription factor GRAS
PfamPF035142.8E-132166537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MQTSRRHGFS DDYLKQYEDV DPYQWGSAQE FDGTQKAQSA RIINSELHRT GGSSSVNSRI  60
PSFDPPSSDS FPANDSPQRQ LDSQSFESLM SYPIKHSHGI QEGVPNLNEE VEDFGDKMRE  120
LESVMFGPDL STLYLPECAF YEGPEQSLLQ TEKSRFFMQM ISRGDLREVL LASAKAMSEN  180
DLVTAEWLMS QLNHMVSVSG EPMQRLGAYM LEGLIARLSS SGSSLYKSLR CKEPVASANL  240
LSYMHLLYEV CPYFKFGYMS ANGAIAEAMR DENRIHIIDF QIAQGSQWFP LIQALSAQPC  300
GPPQIRITGI DDPVSSYARG GGLDIVGKRL SKFAESCNVP FEFCSATVSG SDIEYESLRI  360
RHGEAIAVNF AFMLHHMPDE SVGTQNHRDR LLRLVKCLSP KVVTLVEHES NTNTSPFFPR  420
FLETLDYYAA IFESIDATLP REHEERINVE QHCLAREIVN IVACEGAERV ERHELLTKWK  480
SRFVMSGFSP YPLSSVVNAT IKTLLENYCD KYRLEEKDGA LYLGWLNRAL VASSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-601665375375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812730.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812737.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812742.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812749.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4E0170.0A0A2I4E017_JUGRE; scarecrow-like protein 21
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]