PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0038.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 544aa    MW: 59793.7 Da    PI: 7.4312
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.81.2e-941785433374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                          + L+e+A a+++g +e a ++++r+ + ++p+g+p qRla y+  AL+++l++ ++++l+      +    +sse+  +++l+++ s ++
  Kaladp0008s0038.1.p 178 QSLIEAAAAIADGRQESAAEIVTRVAQSSNPRGTPGQRLAYYMSSALKSKLTSvEGQNLS-----DQI---RSSEHYESVQLLYQHSSCF 259
                          78**************************************************92222222.....222...38899999*********** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          k+++l+aN aI ea++  + +H++Dfd++ G+Q+ +Llq L+ R++g+p s+RiT+v+       e+ +  +e+L+++ +++gvpfe ++
  Kaladp0008s0038.1.p 260 KLGFLAANLAIIEATAAVKSLHVVDFDMGDGAQYHNLLQLLSLRKSGKPtSVRITAVDV---RGLERWRIAKEKLSQLSDRVGVPFELKT 346
                          *********************************************77776********9...57999*********************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                          l   ++ d++ e+L  +p+E++aVnl+++l +l+desvs+e++rde+L+ vk+l+++vv+vve+++++n++++l+r++e++++y al++s
  Kaladp0008s0038.1.p 347 L-RLKVGDVSRESLCSSPDEVVAVNLAYSLSKLPDESVSTENQRDELLRRVKGLQARVVTVVEEDMNCNTAPLLTRVAECCSFYGALLES 435
                          5.889************************************************************************************* PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve......ee 354
                          ++++++re+ eri vE+  lgr+  n va eg +r++r+e ++kWr+r+++aGF++ p+s++++++ +  ++  +  g rv       e+
  Kaladp0008s0038.1.p 436 MDSGMGREEAERIRVEEG-LGRSMGNSVALEGGDRVQRCEVFGKWRARMGMAGFEAKPVSQNVVDSLSWRINSNS-GGTRVGcplfvkED 523
                          ******************.**************************************************999998.45554444444499 PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +g +++gW++r L+++SaWr
  Kaladp0008s0038.1.p 524 NGGVCFGWMGRILTVTSAWR 543
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.834150518IPR005202Transcription factor GRAS
PfamPF035144.3E-92178543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MYRLPQLLPE NGSLGKRTLA EFLNQPFQHQ QGTAAEFSMR PVKPRIYHNP SPISPQSPID  60
LLPEIGAAFV GRCPSRYQNF GINNLSYHHN RVAVAETDKK MMNRLHELEK QLLGDDNDDS  120
VSVITGNEWS DTIQNLIATN EKPYPPLQLQ QQVYTASPTS SSSSCSSYTV ASPICPKQSL  180
IEAAAAIADG RQESAAEIVT RVAQSSNPRG TPGQRLAYYM SSALKSKLTS VEGQNLSDQI  240
RSSEHYESVQ LLYQHSSCFK LGFLAANLAI IEATAAVKSL HVVDFDMGDG AQYHNLLQLL  300
SLRKSGKPTS VRITAVDVRG LERWRIAKEK LSQLSDRVGV PFELKTLRLK VGDVSRESLC  360
SSPDEVVAVN LAYSLSKLPD ESVSTENQRD ELLRRVKGLQ ARVVTVVEED MNCNTAPLLT  420
RVAECCSFYG ALLESMDSGM GREEAERIRV EEGLGRSMGN SVALEGGDRV QRCEVFGKWR  480
ARMGMAGFEA KPVSQNVVDS LSWRINSNSG GTRVGCPLFV KEDNGGVCFG WMGRILTVTS  540
AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-441785436375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513664.11e-167scarecrow-like protein 8
SwissprotQ9FYR71e-132SCL8_ARATH; Scarecrow-like protein 8
TrEMBLB9RIU51e-166B9RIU5_RICCO; DELLA protein GAI, putative
STRINGXP_002513664.11e-167(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-125SCARECROW-like 8