PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00030609-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HB-other

Protein Properties

Length: 479aa MW: 53920 Da PI: 8.7006

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00030609-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ q+ +Le+++++++yp++e++ +LA+++gLte+q++ WF+ rR k+kk WALNUT_00030609-RA 20 KKRRLKTPAQVMALEKFYNEHKYPTEEMKSQLAEQIGLTEKQISGWFCHRRLKDKK 75 8999**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-22	2	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	16	76	IPR001356	Homeobox domain
SMART	SM00389	6.6E-20	18	80	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-19	18	88	IPR009057	Homeodomain-like
Pfam	PF00046	5.6E-17	20	75	IPR001356	Homeobox domain
CDD	cd00086	9.55E-19	20	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MEESSGVHSE EYKVSSEKDK KRRLKTPAQV MALEKFYNEH KYPTEEMKSQ LAEQIGLTEK 60 QISGWFCHRR LKDKKSLRDE ACPSGRQDHS SGVVQDRGSG LGQDSCGSTK HGDYRNVDPR 120 EVESRRLYRN DFRAAGFTYE HRSHYRGTAS CTDNTSSESS SSSQDRLFSQ AEDPDDRENS 180 RYLTHNGIIT PINTNSAKIK GYKPSGYLKV KGEIENAAIT AVKMQLGGRY REDGPPLGVE 240 FHPVPPGAFE SPIRNPVCEP SYVGNSALSH SPDISGLERQ PSLSNRYEVY NSKLSSQDLC 300 VEGAAYCSSM HGSDYQDKIS QHQLKQNSTV LNHTKPFSKR NSFSDLYEDS PREKIAYNSK 360 RKQRMSGNCG AEGSEIDSVA NGHGHYDGKI GSKLHDYDDV SPNIIKRNET FELKPSILIR 420 NLCKSADKEE RGPSMRMKKK KKVNEKWKGI EEYSNQVKLI KHPSNKMTGC VTCSVLPCY

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MEESSGVHSE EYKVSSEKDK KRRLKTPAQV MALEKFYNEH KYPTEEMKSQ LAEQIGLTEK  60
QISGWFCHRR LKDKKSLRDE ACPSGRQDHS SGVVQDRGSG LGQDSCGSTK HGDYRNVDPR  120
EVESRRLYRN DFRAAGFTYE HRSHYRGTAS CTDNTSSESS SSSQDRLFSQ AEDPDDRENS  180
RYLTHNGIIT PINTNSAKIK GYKPSGYLKV KGEIENAAIT AVKMQLGGRY REDGPPLGVE  240
FHPVPPGAFE SPIRNPVCEP SYVGNSALSH SPDISGLERQ PSLSNRYEVY NSKLSSQDLC  300
VEGAAYCSSM HGSDYQDKIS QHQLKQNSTV LNHTKPFSKR NSFSDLYEDS PREKIAYNSK  360
RKQRMSGNCG AEGSEIDSVA NGHGHYDGKI GSKLHDYDDV SPNIIKRNET FELKPSILIR  420
NLCKSADKEE RGPSMRMKKK KKVNEKWKGI EEYSNQVKLI KHPSNKMTGC VTCSVLPCY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	24	KKRRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018857719.1	0.0	PREDICTED: uncharacterized protein LOC109019799 isoform X2
TrEMBL	A0A2I4HNI4	0.0	A0A2I4HNI4_JUGRE; uncharacterized protein LOC109019799 isoform X2
STRING	VIT_06s0009g03530.t01	1e-168	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-93	HB-other family protein