PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00027909-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SRS

Protein Properties

Length: 490aa MW: 50481.9 Da PI: 7.8425

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00027909-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.4	5.5e-66	266	431	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 s ta+CqdCGnqakkdC+h RCRtCCksrgfdC thvkstWvpaa+rrerq ++a+ s+ a +s a++ sk++r +++++s+t++s+ WALNUT_00027909-RA 266 SSTATCQDCGNQAKKDCSHGRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMTASGSAAAGSSGATSCSKKPRLI---TSQTTSHTSTSN 353 6789**************************************************9999999999999986...666778889999 PP DUF702 94 aeskkeletss.................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ WALNUT_00027909-RA 354 TTPPRSFDTSSshqvfaefctdgnfkeaLPGQVRVPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGIEN 431 9999999999*************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-60	268	430	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.7E-27	270	312	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.8E-29	382	429	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MYDLSELHWV VVQLVLRGCG AGSFLARGAR CGLGLVHGGG CASQEWILLT RPTVVATTRR 60 LPSDSGAFAD WGAASSSAAG CAAPDELSLG FNAGPTAAGT STGPTSGMWQ AASSRPINYG 120 LAPTEMGMVG LRDLFVVAPA SSFHHNNHHG HHHHQHDPMM SNPHSINGSN PATALGMGVG 180 VGVIPLLTAT SCLAPPNIGV EDENNALSNT NRGGGGIQLW QNNQQTQHGH YFKKPAILDH 240 QGGSGNFLQS GGNGGGGIGG SATTTSSTAT CQDCGNQAKK DCSHGRCRTC CKSRGFDCVT 300 HVKSTWVPAA RRRERQLMTA SGSAAAGSSG ATSCSKKPRL ITSQTTSHTS TSNTTPPRSF 360 DTSSSHQVFA EFCTDGNFKE ALPGQVRVPA VFKCVRVTAV EDGEDEYAYQ AVVKIGGHVF 420 KGFLYDQGIE NRDYPNISEL HLGGGGGGSS GGGGGRNGAS SSSPILDPSD VYAASGRGLL 480 GGSSYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MYDLSELHWV VVQLVLRGCG AGSFLARGAR CGLGLVHGGG CASQEWILLT RPTVVATTRR  60
LPSDSGAFAD WGAASSSAAG CAAPDELSLG FNAGPTAAGT STGPTSGMWQ AASSRPINYG  120
LAPTEMGMVG LRDLFVVAPA SSFHHNNHHG HHHHQHDPMM SNPHSINGSN PATALGMGVG  180
VGVIPLLTAT SCLAPPNIGV EDENNALSNT NRGGGGIQLW QNNQQTQHGH YFKKPAILDH  240
QGGSGNFLQS GGNGGGGIGG SATTTSSTAT CQDCGNQAKK DCSHGRCRTC CKSRGFDCVT  300
HVKSTWVPAA RRRERQLMTA SGSAAAGSSG ATSCSKKPRL ITSQTTSHTS TSNTTPPRSF  360
DTSSSHQVFA EFCTDGNFKE ALPGQVRVPA VFKCVRVTAV EDGEDEYAYQ AVVKIGGHVF  420
KGFLYDQGIE NRDYPNISEL HLGGGGGGSS GGGGGRNGAS SSSPILDPSD VYAASGRGLL  480
GGSSYGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018858511.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
Refseq	XP_018858512.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
Refseq	XP_018858513.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
Swissprot	Q94CK9	2e-85	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2I4HQT5	0.0	A0A2I4HQT5_JUGRE; protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
STRING	EOY32912	1e-147	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	1e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]