PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023164-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 181aa    MW: 20072.6 Da    PI: 4.6044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023164-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-181564255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  WALNUT_00023164-RA 15 SYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDVAALHLRG 64
                        6*****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8131572IPR001471AP2/ERF domain
SMARTSM003807.6E-341578IPR001471AP2/ERF domain
PfamPF008471.0E-111564IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-291573IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-211573IPR016177DNA-binding domain
PRINTSPR003671.5E-111627IPR001471AP2/ERF domain
CDDcd000189.83E-201674No hitNo description
PRINTSPR003671.5E-115474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEEPSSQNEM VAPTSYRGVR KRKWGKWVSE IREPGKKTRI WLGSYEAPEM AAAAYDVAAL  60
HLRGRGTPLN FPELVDSFPR PASSCPEDVQ SAAQEAALRI RRQAKVPVEV GSSGGNAVPA  120
RVGLSASQIQ AINESPLDSP KMWTELAGAL LLEENKMVLY DNDIVELSEW EEIQYESLWD  180
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-161677668ATERF1
3gcc_A7e-161677668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849491.11e-129PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ286e-51ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A2I4H0031e-128A0A2I4H003_JUGRE; ethylene-responsive transcription factor ERF022-like
STRINGPOPTR_0019s10430.14e-70(Populus trichocarpa)
STRINGXP_010104523.16e-70(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-52ERF family protein