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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021412-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bZIP | ||||||||
Protein Properties | Length: 557aa MW: 61549.3 Da PI: 6.8418 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.4e-10 | 272 | 312 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L WALNUT_00021412-RA 272 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 312 788*************************9777777666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-7 | 261 | 315 | No hit | No description |
SMART | SM00338 | 2.7E-9 | 268 | 331 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 270 | 314 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 1.07E-23 | 272 | 324 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-7 | 272 | 315 | No hit | No description |
Pfam | PF00170 | 3.5E-7 | 272 | 312 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 275 | 290 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.9E-30 | 354 | 429 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MGDACFVLFI SELSCLWGFS GLIFIHNFLV LGLSYSSSSG LGNEGLVIFC QNKQSRPTWF 60 LAPDRKLLKS SATLLSLTLS QSVASPCFVA CNCRRTKVLR CDDCDGDFMG SRTVEIGAED 120 GNNVMTGMLS LVPAIPNSNS LGTEGNTIRS SRISDLGTFE QSLGFRIEDA ADLIPVYYQM 180 KSNSQALGTD NQFATLNKTL QLQTEPQANL VSTFGGHREN WGESTMAEAS PRTDTSTDDT 240 DDKNHGHERG QLTAVVVSDS SDKSKEKSGD QKTLRRLAQN REAARKSRLR KKAYVQQLES 300 SRLKLTQLEQ ELQRARQQGI FISSSGDQSH SMSGNGALAF DIEYARWLEE HNKQINELRA 360 AVNSHAADAE LRTIVDNVTA HFDDIFRLKG IAAKVDVFHI LSGMWQTTAE RCFMWIGGFR 420 SSELLKLLVN QLEPLTEQQL VGIYNLQQSS QQAEDALSQG MEALQQSLAE TLANGSPNPS 480 GSSGNVANYM GQMAMAMGKL GTLEGFLRQA DNLRQQTLQQ MHRILTTRQS ARALLAKNDY 540 FSRLRALSSL WLARPRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850936.1 | 0.0 | PREDICTED: transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_018850937.1 | 0.0 | PREDICTED: transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_018850938.1 | 0.0 | PREDICTED: transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_018850939.1 | 0.0 | PREDICTED: transcription factor TGA2.3-like isoform X1 | ||||
Refseq | XP_018850940.1 | 0.0 | PREDICTED: transcription factor TGA2.3-like isoform X1 | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A2I4H472 | 0.0 | A0A2I4H472_JUGRE; transcription factor TGA2.3-like isoform X1 | ||||
STRING | EOY08645 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-129 | bZIP family protein |