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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010552-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bZIP | ||||||||
Protein Properties | Length: 468aa MW: 50843.9 Da PI: 5.6832 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51.8 | 1.8e-16 | 264 | 321 | 3 | 60 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 + kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L eN++L k+l e+++++ + WALNUT_00010552-RA 264 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRVENSSLLKRLTEITQKYNEAA 321 579************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.2E-20 | 262 | 326 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.6E-12 | 263 | 318 | No hit | No description |
PROSITE profile | PS50217 | 11.783 | 264 | 319 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.0E-14 | 265 | 318 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.27E-11 | 266 | 317 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 269 | 284 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 8.0E-45 | 333 | 458 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MDRVFSVEEI SDQFWSAPLR PPPPTPHSQS RPLSAGSVSL DESSRMNRSE SEWAFQRFLQ 60 LEASSNAETQ TETKTETETS SAVHPNKDVV VEIGDDEDNT KNANNISNHN NIIRNKSPTS 120 TASTSSFGES CTAPFNAPPP NIPIDSDEYQ DFLKSKLNLA CAAVALTRGP LVKPQDSAAL 180 SDNGLQASNT SQLGSQAPSK GAGGDSSWSR EKDSNGSLGI PSLPVQKKSG VPARPTTSGS 240 SREQSDDEEV EGENELTENM HPTDAKRVRR MLSNRESARR SRRRKQAHLT ELETQVAQLR 300 VENSSLLKRL TEITQKYNEA AVDNRVLKAD VETLRAKVKM AEETVKRITG LNPLFHAMSD 360 ISSMGMPSIN GSPSDTSTDA AVPVQDNSNH HFFQPSMNNN MSTHDMGVNN GLADVTSVEN 420 VQRNSTVAAV VGSRMERTAS MQRVASLEHL EKRIRGGTSP CGTQSNGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 285 | RRSRRRKQ |
2 | 280 | 285 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826989.1 | 0.0 | PREDICTED: light-inducible protein CPRF2 | ||||
Swissprot | Q99090 | 1e-140 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A2I4F5S3 | 0.0 | A0A2I4F5S3_JUGRE; light-inducible protein CPRF2 | ||||
STRING | XP_002531296.1 | 1e-174 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4176 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 2e-68 | bZIP family protein |
Publications ? help Back to Top | |||
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