PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009467-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 45673.4 Da PI: 4.9597 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.1 | 1.2e-55 | 24 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+ WALNUT_00009467-RA 24 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 113 69****************************.9***************953432233667******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk+v++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle WALNUT_00009467-RA 114 DKAVYD-KAKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 153 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-57 | 16 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.38 | 24 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-29 | 25 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MSLRGGGEFD AASTAMMETM ESTVPPGFRF HPTDEELVGY YLRKKVASQK IDLDVIRDID 60 LYRIEPWDLQ ERCRIGYEEQ NEWYFFSHKD KKYPTGTRTN RATMAGFWKA TGRDKAVYDK 120 AKLIGMRKTL VFYKGRAPNG QKTDWIMHEY RLESEENGPP QASIILLHIA RSFFWFCINS 180 SCWNPLLRYQ YFQLFQFPCS LVAPEEGWVV CRAFKKRTTA QNKSMEGWDT SYFYEEPTGV 240 SSVVDPIEFI SRQPPNFLAQ NLMCKQEIES DNLSFMQSDQ FVQLPQLESP SLPLMKRPSS 300 ISFISENNEE EEQINKRCND TKKVTDWRAL DKFVASQLSQ EDRFEGDGES SFGAHHNSDL 360 ALLLLQSSRD EEGKLNGFLN SSSDDCDIGI CIFEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 21 | 152 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821982.1 | 0.0 | PREDICTED: NAC domain-containing protein 37 | ||||
Refseq | XP_018821983.1 | 0.0 | PREDICTED: NAC domain-containing protein 37 | ||||
Swissprot | Q9SL41 | 1e-157 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A2I4ERG5 | 0.0 | A0A2I4ERG5_JUGRE; NAC domain-containing protein 37 | ||||
STRING | VIT_04s0023g03110.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4565 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-144 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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