PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006934-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 583aa    MW: 65243.8 Da    PI: 7.9866
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006934-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.6e-085015391854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  WALNUT_00006934-RA 501 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 539
                         6887779******************************88 PP
2BELL70.62.7e-23376442572
                BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +++kk++Ll+ll+ Vd+r +q++++++tvis+F+a+++l++ ++ +++Al++iS+ +++L+++i+++i
  WALNUT_00006934-RA 376 VEAKKNHLLTLLQVVDDRCNQCMDEIHTVISAFHAATELDP-QIDARFALQTISFFYKNLRERISNHI 442
                         579**************************************.***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-14302440IPR006563POX domain
PfamPF075268.3E-21308439IPR006563POX domain
CDDcd000864.92E-11483544No hitNo description
SMARTSM003898.2E-6483547IPR001356Homeobox domain
SuperFamilySSF466891.75E-15485552IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-26486549IPR009057Homeodomain-like
PfamPF059209.4E-15500539IPR008422Homeobox KN domain
PROSITE profilePS5007110.851502543IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MENNLGRVPM GMGSQSPVDI DGFAPCTTTN ALTQPESFDL NNQNHVMAGF PVLSALQGEP  60
INGLHANLHI PNGVCIAESN ALLTLLGRHV VRDATPCSPR LTDNSGFPDQ AAGGTIISTA  120
SHATFLPARS GLQENFNNLA FSAASICPVE VLPTYDSNGN SNALFATSVK CGYDNVLGSM  180
NTKWDTKYPA PLELDGKSPV RAELQPYPSA VNLVPDGWMS SNRGHVSANH SYSPSNFNNE  240
LSLTLATSEP SILREINIPD RPSEMGMSDV TRHCLNKKRL RSQPMSCNST EISLNFGSYN  300
PPQFSQGVLG SRYLHVIKQI FAQIAKYSLE NLDHSSYPTA PFSSNFAAER WMPSMFPDVD  360
GGFELQMEST LRIWTVEAKK NHLLTLLQVV DDRCNQCMDE IHTVISAFHA ATELDPQIDA  420
RFALQTISFF YKNLRERISN HILAMGAHFN STCKKEKERS FETSFIQKQW ALQQLKTKDH  480
HIWRPQRGLP ERSVSILRAW MFQNFLHPYP KDAEKHLLAV KSGLTRSQVS NWFINARVRL  540
WKPMIEEMYA EMNRRKGRRV EEGAQSNHRS HIISISNRRS NVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14489547563Homeobox protein Meis2
3k2a_B1e-14489547563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844647.10.0PREDICTED: homeobox protein ATH1-like isoform X1
RefseqXP_018844648.10.0PREDICTED: homeobox protein ATH1-like isoform X1
SwissprotP487311e-106ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2I4GL730.0A0A2I4GL73_JUGRE; homeobox protein ATH1-like isoform X1
STRINGEOY298800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-108homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]