PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006373-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 352aa    MW: 39323.1 Da    PI: 6.6351
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006373-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-10150202557
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +    
  WALNUT_00006373-RA 150 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 202
                         9****************************************999877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-17146210IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.68148211IPR004827Basic-leucine zipper domain
PfamPF001707.1E-9150198IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11150201No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-10150204No hitNo description
CDDcd147032.11E-23151200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAPIQDLSNP NPNTMLNPSS RLPTELASSF PIPNPLTSSL PLRGPHHRRA HSEVHFRIPD  60
ELDPVSDSLL DEFGSEDDLF CSYMDIEQLG SRPGISGQSF PKPENAAQVE RPRHRHSNSV  120
DGGASMLEGI EAKKAIAPEK LAELWTVDPK RAKRILANRQ SAARSKERKA RYISELERKV  180
QTLQTEATTL SAQLTLFQRD TTGLTTENSE LQLRLQAMEQ QAQLRDALNE ALKKEVERLK  240
AATGEIMTHT DAYNMEMHHI SYPPSSFFSH QPQPQPGDVQ NIQMPQFHQF QSNMSRPHQP  300
VLAAAQAHAY TDTLQQDPIG RLQGLDISGR SSHMVKPEGM TSISVSESSN RF
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821860.10.0PREDICTED: transcription factor RF2b
SwissprotO228731e-112BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A2I4ER270.0A0A2I4ER27_JUGRE; transcription factor RF2b
STRINGXP_008233880.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-115bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]