PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003268-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 259aa    MW: 28960.1 Da    PI: 7.4218
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003268-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18170204135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  WALNUT_00003268-RA 170 CSHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 204
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.5E-761258IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.728164200IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-17164214IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-14168228No hitNo description
Gene3DG3DSA:3.30.50.107.3E-14168202IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.36E-14169216No hitNo description
PfamPF003204.2E-16170204IPR000679Zinc finger, GATA-type
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDMYGVSSSA ADCSFPVDDL LDFSNDEIFS SSDSLHLHHP HYLPPPLENQ PNNHRLSQPT  60
NNDHPTHFSA DFTNNLCVPS DDAAELEWLS QFVDDSFTDF PANKLAGNVF FPSDASLSGS  120
RAARAKRSKA PTHSTTTWTS SPEPDSPAAG GMRPKMKNAR AGGEGEVRRC SHCASEKTPQ  180
WRTGPLGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTQ HSNSHRKVME LRRQKELMRL  240
QQQQLQQQRH HHHRDFEVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018854035.10.0PREDICTED: GATA transcription factor 4
SwissprotO497411e-71GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A2I4HCZ60.0A0A2I4HCZ6_JUGRE; GATA transcription factor
STRINGVIT_15s0021g02510.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-60GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]