PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S12092.10

Common Name

JCGZ_08268, LOC105634562

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 582aa MW: 65542.1 Da PI: 4.8648

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S12092.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	7.1e-52	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp GfrF+Ptdeelv++yL+ k++g++ e+ +vi+e+d++k+ePwdLp ++++++++ew+fF++ d+ky++g+r nrat++gyWkatgkd++++s Jcr4S12092.10 9 LPLGFRFRPTDEELVNYYLRLKINGNDREV-RVIRELDVCKWEPWDLPdlSNIQTNDQEWFFFCPLDRKYPNGHRLNRATSKGYWKATGKDRKIKS 103 699**********************999.99**********96448999999********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l+g+kktLvfy+grap+g++t+Wv+heyr+ Jcr4S12092.10 104 -GNNLIGMKKTLVFYTGRAPRGKRTHWVIHEYRA 136 .999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-58	3	168	IPR003441	NAC domain
PROSITE profile	PS51005	54.885	9	168	IPR003441	NAC domain
Pfam	PF02365	3.3E-26	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MAVMSLNSLP LGFRFRPTDE ELVNYYLRLK INGNDREVRV IRELDVCKWE PWDLPDLSNI 60 QTNDQEWFFF CPLDRKYPNG HRLNRATSKG YWKATGKDRK IKSGNNLIGM KKTLVFYTGR 120 APRGKRTHWV IHEYRATEDE LDGTKPGQAG PISLCLLSPF VICRLFKKQD DTVDLNLEEP 180 EATLSSPTAV QSSPEVTESE LTVPQASPVH TPPPNIVPSN EWSNVNQAGD EKLDVMTPEE 240 DTQLEEFLNS FAQPPEPLDD KLFSPLHAQV QAEVGSLSYS VVNDSGVQFQ HGTNELEVDY 300 VTSFLNDILR QPIEYSCKDS ESYGGLEASQ VLQEKELQGS VWPEEDIDRK LVFQGETTPH 360 DNRILTSDYN VYHQHKDFGS VHNESYGNQS LASSFAVGQC SSLKETSNHM NQINSGENVG 420 AGIRIRPRNP QSLPNTPNFP AQGVASRRIR LQCKLQVQPV KFGENWSSMP EEHTSDPNVS 480 EDSEVTENDT SVGSASTTYE HEHENFLVYE ASESNQFSEE STSNIGPNIR LRNRVSVLKK 540 VPSVISKASS TRRPIFMFKV VVLVILLVIL VSTQPYLSFE TA

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MAVMSLNSLP LGFRFRPTDE ELVNYYLRLK INGNDREVRV IRELDVCKWE PWDLPDLSNI  60
QTNDQEWFFF CPLDRKYPNG HRLNRATSKG YWKATGKDRK IKSGNNLIGM KKTLVFYTGR  120
APRGKRTHWV IHEYRATEDE LDGTKPGQAG PISLCLLSPF VICRLFKKQD DTVDLNLEEP  180
EATLSSPTAV QSSPEVTESE LTVPQASPVH TPPPNIVPSN EWSNVNQAGD EKLDVMTPEE  240
DTQLEEFLNS FAQPPEPLDD KLFSPLHAQV QAEVGSLSYS VVNDSGVQFQ HGTNELEVDY  300
VTSFLNDILR QPIEYSCKDS ESYGGLEASQ VLQEKELQGS VWPEEDIDRK LVFQGETTPH  360
DNRILTSDYN VYHQHKDFGS VHNESYGNQS LASSFAVGQC SSLKETSNHM NQINSGENVG  420
AGIRIRPRNP QSLPNTPNFP AQGVASRRIR LQCKLQVQPV KFGENWSSMP EEHTSDPNVS  480
EDSEVTENDT SVGSASTTYE HEHENFLVYE ASESNQFSEE STSNIGPNIR LRNRVSVLKK  540
VPSVISKASS TRRPIFMFKV VVLVILLVIL VSTQPYLSFE TA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-43	8	169	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-43	8	169	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-43	8	169	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-43	8	169	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-43	8	169	19	169	NAC domain-containing protein 19
3swm_B	5e-43	8	169	19	169	NAC domain-containing protein 19
3swm_C	5e-43	8	169	19	169	NAC domain-containing protein 19
3swm_D	5e-43	8	169	19	169	NAC domain-containing protein 19
3swp_A	5e-43	8	169	19	169	NAC domain-containing protein 19
3swp_B	5e-43	8	169	19	169	NAC domain-containing protein 19
3swp_C	5e-43	8	169	19	169	NAC domain-containing protein 19
3swp_D	5e-43	8	169	19	169	NAC domain-containing protein 19
4dul_A	4e-43	8	169	16	166	NAC domain-containing protein 19
4dul_B	4e-43	8	169	16	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775332	0.0	KC775332.1 Jatropha curcas NAC transcription factor 054 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072818.1	0.0	NAC domain-containing protein 91 isoform X1
TrEMBL	R4NHR7	0.0	R4NHR7_JATCU; NAC transcription factor 054
STRING	cassava4.1_004348m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5551	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-102	NAC transcription factor-like 9

Link Out ? help Back to Top
Entrez Gene	105634562

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]