PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05961.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 221aa    MW: 24944.8 Da    PI: 8.503
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05961.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.7e-18124158135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Jcr4S05961.30 124 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 158
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-16118168IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-14122156IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385122154IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14122182No hitNo description
CDDcd002026.34E-14123170No hitNo description
PfamPF003205.4E-16124158IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDVYGIPTPD YFRIDDLLDF SNDEIFSSSS TATDHHLSPP QNPSIHFPSS TPFNPALSTD  60
FTDDLSVPRT RSSTSLLTHS PVPLNVQSDV VILWSKQFAA NVRVGTKDTN RASSPTANGG  120
VRRCTHCASE KTPQWRTGPL GPKTLCNACG VRYKSGRLVP EYRPAASPTF VLTQHSNSHR  180
KVMELRRQKE MLRQQHQQQK DDQTIYHPHH HRQPQQDFEV C
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083638.11e-120GATA transcription factor 4
SwissprotO497431e-53GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A067K9621e-118A0A067K962_JATCU; GATA transcription factor
STRINGcassava4.1_022929m6e-82(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-54GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]