PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03095.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 571aa    MW: 63326.5 Da    PI: 7.4972
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03095.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.6e-123056935
           GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                   TplWR+gp  ++ LCnaCG ++r kg+
  Jcr4S03095.20 30 TPLWRNGPPEKPVLCNACGSRWRTKGT 56
                   9*******88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-41670IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-71960No hitNo description
Gene3DG3DSA:3.30.50.102.3E-82956IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.18E-103066No hitNo description
PfamPF003208.4E-103056IPR000679Zinc finger, GATA-type
PfamPF139191.2E-10311401IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MQVLLRLFSL SCIPLAKPKL SCSLFPVFGT PLWRNGPPEK PVLCNACGSR WRTKGTLANY  60
TPLHARADPD DYEDHRISRV KSISINKNKD VKLLKRKANY DNGVVGVVGP DYNQGYRKVL  120
DEDTSNRSSS GSAISNSESC AQFGSADASD LTDTVVISLL LLVLHISPAQ SIVWDTMVPS  180
RKRTCVNRSK PSPVEKLTKE LYTIWHEQQS SCFSGSSEED LLFESETPMV SVEIGHGSVL  240
IRHPSSIARD EESEASSLSV ENKQYSTNEA YSHSAILPVH NENRSVNISS LAIGKAKNPT  300
GPGMQQEQLK RDKTPHERAQ VLGSHNSPLC NVDLNDILNF EEFARSLTYE EQQQLLKYLP  360
PVDTTQLPDS IKSMFDSNQF KENMSCYKHL LMEGVFDLSF SGAKTEDCNT LKRLTLSNLS  420
KSKWVEQYHQ LKKCKNSTGK SLVGRGPNLV TSCNSITAKR SRESLGQKIP EVKTMKSPKR  480
INMKATYENK EIMDNDCSCF SPRSLFALPS DGGTLMLDSL NYVDESSDQD LLLDVPSNGS  540
FPQAELLHPA LSFGQQASTS SSSTHPHLVR P
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070091.10.0GATA transcription factor 26
SwissprotQ8W4H11e-149GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A067L7600.0A0A067L760_JATCU; Uncharacterized protein
STRINGcassava4.1_005076m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-146GATA transcription factor 26