PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01426.70
Common NameJCGZ_07681, LOC105638160
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 528aa    MW: 59343.4 Da    PI: 6.5136
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01426.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-084474851854
                    HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Jcr4S01426.70 447 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 485
                    5887779******************************88 PP
2BELL84.31.5e-27319388272
           BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +++l++kk++Ll+ll+ Vd+rY+++ ++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i++qi
  Jcr4S01426.70 319 KRALEAKKTQLLTLLQLVDDRYNRCLDEIHTVVSAFHAATELDP-QMHTRFALQTISFMYKNLRERISNQI 388
                    6899****************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.2E-23236386IPR006563POX domain
PfamPF075263.5E-27241385IPR006563POX domain
PROSITE profilePS5007111.029426489IPR001356Homeobox domain
CDDcd000861.03E-10429490No hitNo description
SMARTSM003896.9E-6429493IPR001356Homeobox domain
SuperFamilySSF466892.31E-15431498IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-26432495IPR009057Homeodomain-like
PfamPF059208.3E-15446485IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MTLNSLFFDS FDLNNQNQNL DGYTVLPTLR GTPISGNVDF ARDQEEFQEQ FPISGPALAT  60
IVASSRNGLQ ENLTSLAISE PSMYPSEVLR SYVSNNDLSH GLNSSFASSV NYSCDEVFGN  120
VNAKEEVNRL SAPIRTGFQN YSSIGDMEPN SWISSNSVNV NTDNLYSSSK FSNELSLSLA  180
TSQPSGINGS HIADQCSEIS CSGVTRHCFK ETRLGSEQTS SSCKELSLSC GSYRAGQFSH  240
VISGSRYLQL IQEILAQIAS YSLENLDQMN FSSIGIKVGT NMLFSSSYPV EGGMYPMGPD  300
ESPNVNDRFE VQVDPALQKR ALEAKKTQLL TLLQLVDDRY NRCLDEIHTV VSAFHAATEL  360
DPQMHTRFAL QTISFMYKNL RERISNQILA MGAHFDFTGA RGTEVSLETS YLQKQWSLQQ  420
LKKREHQLWR PQRGLPERSV SVLRAWMFQN FLHPYPKDAE KHLLAVKSGL TRSQVSNWFI  480
NARVRLWKPM IEEMYAEMNR RKGRQGDEGS NSNQRNHISI SNLRFNVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14435493563Homeobox protein Meis2
3k2a_B1e-14435493563Homeobox protein Meis2
4xrs_A1e-14435492158Homeobox protein Meis1
4xrs_B1e-14435492158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0220220.0KF022022.1 Jatropha curcas homeobox 1 (H1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536611.10.0homeobox protein ATH1 isoform X2
SwissprotP487311e-116ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A067KP980.0A0A067KP98_JATCU; Uncharacterized protein
STRINGcassava4.1_004408m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-102homeobox gene 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]