PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002419.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 995aa MW: 109474 Da PI: 6.2602

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002419.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Itr_sc002419.1_g00001.1 589 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 640 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.689	579	660	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	593	640	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-23	898	986	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-25	900	981	No hit	No description
SMART	SM00666	4.5E-25	900	982	IPR000270	PB1 domain
PROSITE profile	PS51745	23.719	900	982	IPR000270	PB1 domain
Pfam	PF00564	4.5E-18	901	981	IPR000270	PB1 domain
CDD	cd06407	3.94E-37	901	981	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MPEPDETALP PRSREFLTPL PQSDRDFLMM DLDREFSWTF DQIFAAAASN PAPPFLFSAS 60 EQPCSPLWVF SDDNDDVAAG NAARLSDYSR LISYAGDLDA ITEGVSGKDE KRRLPPPVLG 120 STAKDYLDIS CKIKEKITQA LRYFKESTGE HVLAQVWAPV KTGGRYVLTT LGQPFVLHPN 180 SNGLHQYRMV SLKYMFSVDG ETDGDLGLPG RVFRQKLPEW TPNVQYYSSK EFPRLSHALD 240 YNVRGTLALP IFEPSGHSCV GVLELIMTSQ KINYAPEVDK VCKALEAVNL RSSEILDHPG 300 MQICNEGRQT ALVEILEILT VVCENYKLPL AQTWVPCRHR SVLADGGGLK KSCSSFDGSC 360 MGQVCMSTTD LAFYVVDARM WYFREACVEH HLQKGQGVAG RAFASQRSCF CEDITQFCKT 420 EYPLVHYARM FGLTSCFAIC LRSTDTGNDD YILEFFLPPR AGNFSDHHTL LSSLLLTMKQ 480 HFRSLRVASG DDIEHELGSI EIIKTKMEEK LDLSPESVSL SKSTFTPQPT KITDAQFCPD 540 TVGDQKLTSG LNATNDGADR REPSDTQNHA SLAGKKDVGK KSVRKRGKAE KSISLEVLQQ 600 YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVHGAEGA 660 FTLTNLATNS IPVAVGSISW PATVNDSNQH TSPCSRPSES PKEKNAFFNH NAPGYQDDTE 720 PSNQILRGQV LGNELAPQQN GFAVGEGSNR SRTGSGSGEE SAGTPTSHFS CQGSPCRGNE 780 PSPPNELILS PIHCPDTKIA SNTESTCQPV RAINLLAANS LPNTLVAEQP QEAFGGMLIE 840 DAGSSHNLRN LCSAGETPFD ERMPECSWTH PPCSDALPKG CLAVRPERVP QYPARPELTS 900 ITIKATYRED IIRFRLPLSS GIIKLTEEVS KRLKLEVGTF DIKYLDDDHE WVLIACDADL 960 QECIDISRSS GSTIIRLLVH DIMPHLGSSC ESSGG

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MPEPDETALP PRSREFLTPL PQSDRDFLMM DLDREFSWTF DQIFAAAASN PAPPFLFSAS  60
EQPCSPLWVF SDDNDDVAAG NAARLSDYSR LISYAGDLDA ITEGVSGKDE KRRLPPPVLG  120
STAKDYLDIS CKIKEKITQA LRYFKESTGE HVLAQVWAPV KTGGRYVLTT LGQPFVLHPN  180
SNGLHQYRMV SLKYMFSVDG ETDGDLGLPG RVFRQKLPEW TPNVQYYSSK EFPRLSHALD  240
YNVRGTLALP IFEPSGHSCV GVLELIMTSQ KINYAPEVDK VCKALEAVNL RSSEILDHPG  300
MQICNEGRQT ALVEILEILT VVCENYKLPL AQTWVPCRHR SVLADGGGLK KSCSSFDGSC  360
MGQVCMSTTD LAFYVVDARM WYFREACVEH HLQKGQGVAG RAFASQRSCF CEDITQFCKT  420
EYPLVHYARM FGLTSCFAIC LRSTDTGNDD YILEFFLPPR AGNFSDHHTL LSSLLLTMKQ  480
HFRSLRVASG DDIEHELGSI EIIKTKMEEK LDLSPESVSL SKSTFTPQPT KITDAQFCPD  540
TVGDQKLTSG LNATNDGADR REPSDTQNHA SLAGKKDVGK KSVRKRGKAE KSISLEVLQQ  600
YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVHGAEGA  660
FTLTNLATNS IPVAVGSISW PATVNDSNQH TSPCSRPSES PKEKNAFFNH NAPGYQDDTE  720
PSNQILRGQV LGNELAPQQN GFAVGEGSNR SRTGSGSGEE SAGTPTSHFS CQGSPCRGNE  780
PSPPNELILS PIHCPDTKIA SNTESTCQPV RAINLLAANS LPNTLVAEQP QEAFGGMLIE  840
DAGSSHNLRN LCSAGETPFD ERMPECSWTH PPCSDALPKG CLAVRPERVP QYPARPELTS  900
ITIKATYRED IIRFRLPLSS GIIKLTEEVS KRLKLEVGTF DIKYLDDDHE WVLIACDADL  960
QECIDISRSS GSTIIRLLVH DIMPHLGSSC ESSGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019151514.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3ZVF3	0.0	A0A1S3ZVF3_TOBAC; protein NLP6-like
STRING	XP_009605047.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]