PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001895.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HB-other
Protein Properties Length: 769aa    MW: 81993.9 Da    PI: 4.41
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001895.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.82.8e-061374655
                             S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                 Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                             +f+++++ e+e+  +   ++ p +e    LA+k            ++ +qV +WFqNrR+  
  Itr_sc001895.1_g00001.1 13 RFNPTEVAEMEAILQAhnTQVPAREVLVSLAEKFsasaersgkvVVQMKQVWNWFQNRRYAL 74
                             5888999999999995448999999999999999999999999999*************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-9475IPR009057Homeodomain-like
SMARTSM003890.0018781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-61381IPR009057Homeodomain-like
CDDcd000861.64E-41375No hitNo description
PROSITE profilePS500719.1831377IPR001356Homeobox domain
PfamPF167193.9E-42140267IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNPTEVA EMEAILQAHN TQVPAREVLV SLAEKFSASA ERSGKVVVQM  60
KQVWNWFQNR RYALRAKAAK TPSKVPAPVT HQSEPTIVRT VPQVPQPGPP PPSVRPMIQA  120
PQGPQPIAAP SGRNGSDSSQ MEFEAKSARD GAWYDVAAFL SHRSMETGDP EVLVRFAGFG  180
AEEDEWVNVR RNVRQRSLPC ESSECVAVLP GDLILCFQEG KEQALYFDAH VLDAQRRRHD  240
VRGCRCRFLV RYDHDQSEEI VPLRKICRRP ETDYRLEQLN AESATTKQQK AGTDPQTANT  300
LRVYAFSETA QKPPAISSGK PVEPLAKKIK TDEHVHATTM TSSAHIDGSA STLNPPKAVD  360
HVNAGSNLPP MQQQQASTDS QPGNTLEANA PVESQKPLTE SVQKLPAESM PESSAESKVT  420
PPAEPTSMPP AESMPNPTVQ NTEEEEHATV APMSAAISSI PTPNPVESTD EQLNPEENAS  480
VAAVAPVAPA ISPVTTPNPV EPTDGQLNLE EHANVAATVA PALSSVTTKK PVEPTDGQLN  540
PEEHANVAAT VAPSISSVTT PKPAEPTDRQ LNPEEHANVA ATMAPAISSV TTPNPVEPTD  600
KQLNPEEHPN VAATVAPAIS PVTTPNPIEP TDEQLNPEEL ANVAATVAPA SNSAATSNPT  660
EAPDKQLKAY EQAAPAVAPD SHTDVSVANE YKDVSTKDAE NVSSENVGIS EIPIQSDVLM  720
EICDAMDEDS VAVADMTNML DAMDEDSVAV ADMTNMLDTG GGSANVQQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-491382711134SHH1 SAWADEE
4iur_B5e-491382711134SHH1 SAWADEE
4iut_A5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-491382711134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153960.10.0PREDICTED: mucin-5AC-like isoform X3
TrEMBLA0A484NBB90.0A0A484NBB9_9ASTE; Uncharacterized protein
STRINGXP_009758415.11e-176(Nicotiana sylvestris)
STRINGXP_009628382.11e-179(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-117sequence-specific DNA binding transcription factors;sequence-specific DNA binding