PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001606.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30492.9 Da    PI: 9.9328
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001606.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.4e-30959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien+snrqvtfskRrng+lKKA+E+SvLCda+v+viif+s+gk++e+ss
  Itr_sc001606.1_g00003.1  9 KRIENSSNRQVTFSKRRNGMLKKAKEISVLCDARVSVIIFGSSGKMHEFSS 59
                             79***********************************************96 PP
2K-box561.8e-191302131195
                    K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                              e k  +l++e++++kke++n+q e+Rhl+Ged++sL+++eL+ Le++L+++l++i +k+  +  ++  +lq+  + + een++L+
  Itr_sc001606.1_g00003.1 130 ELKKWNLENEINRIKKENDNMQIELRHLKGEDISSLNYRELMILEDALQNGLRSISEKQAIIKWKSGGTLQN-DQGVAEENEQLS 213
                              55666899***********************************************99987766666666665.556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.86E-39278No hitNo description
SuperFamilySSF554553.01E-34292IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.741133222IPR002487Transcription factor, K-box
PfamPF014863.6E-13135216IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRGRIEIKR IENSSNRQVT FSKRRNGMLK KAKEISVLCD ARVSVIIFGS SGKMHEFSSS  60
PLVEILDQYH KLTGKRLWDA KHESRLLITN RLKSRGQGFK LVTLPDDSQI SLYKRNAKLG  120
CYIKMTDLVE LKKWNLENEI NRIKKENDNM QIELRHLKGE DISSLNYREL MILEDALQNG  180
LRSISEKQAI IKWKSGGTLQ NDQGVAEENE QLSYRLRQLE IAAMNRNLGE MGEVFNQRES  240
NDYESQMPFT FSVQPMQPNL QDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18185179MEF2C
5f28_B1e-18185179MEF2C
5f28_C1e-18185179MEF2C
5f28_D1e-18185179MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3020682e-90AB302068.1 Ipomoea nil CD gene for PI/GLO-related transcription factor CONTORTED, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167777.11e-113PREDICTED: floral homeotic protein FBP1-like isoform X1
SwissprotQ034881e-100FBP1_PETHY; Floral homeotic protein FBP1
TrEMBLA8R0641e-111A8R064_IPONI; PI/GLO-related transcription factor CONTORTED
STRINGXP_009588903.13e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
    Differential expression of two MADS box genes in wild-type and mutant petunia flowers.
    Plant Cell, 1992. 4(8): p. 983-93
    [PMID:1356537]