PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001446.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 334aa    MW: 36844.8 Da    PI: 6.8411
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001446.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33181238259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s++prsYYrCts++Cpvkk+vers +dp+vv++tYeg+H+h+
  Itr_sc001446.1_g00003.1 181 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCPVKKRVERSYQDPSVVITTYEGQHDHH 238
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-35165240IPR003657WRKY domain
SuperFamilySSF1182902.75E-29172240IPR003657WRKY domain
PROSITE profilePS5081132.363175240IPR003657WRKY domain
SMARTSM007742.1E-38180239IPR003657WRKY domain
PfamPF031066.7E-26181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAEELRDFYY HQPFQDDRHG GGFLYSAAQA SSMADSSLIH HHHNLDPTSP YLSFTDYLQG  60
SSDFEASAGV GFSSSPPSLD RERRPVNVTT TDAAAGGGST ETPVAMTPNS SISSSSTEAG  120
GGDNEDSKHK REKLAKETEG EDDGEDNNSS KKENKGKKKG EKKQRQPRFA FMTKSEVDHL  180
EDGYRWRKYG QKAVKNSPYP RSYYRCTSQK CPVKKRVERS YQDPSVVITT YEGQHDHHIP  240
TNLRGSLAGM LPPSMLATSS LLGGPPPQGG ATLPPELLMA QINPLAHHFY GGGHNAASMM  300
FQPHQNNLTQ MQQLHPDFGL LQDMVPSMIF KQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27170240777Probable WRKY transcription factor 4
2lex_A2e-27170240777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190147.10.0PREDICTED: probable WRKY transcription factor 28
TrEMBLA0A1J6JA382e-96A0A1J6JA38_NICAT; Putative wrky transcription factor 71
STRINGXP_009760855.15e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-52WRKY DNA-binding protein 71