PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001387.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 662aa    MW: 75539.9 Da    PI: 6.1606
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001387.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1705.8e-2260141289
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              fYn YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     ++r+etrtgC a++k +++++++w+v+++eleHnH
  Itr_sc001387.1_g00003.1  60 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKTEAN-----KPRPETRTGCPAMIKFRLMENKRWRVIEVELEHNH 139
                              9***************99997.66779*************998877.....9********************************** PP

                     FAR1  88 el 89 
                               +
  Itr_sc001387.1_g00003.1 140 LI 141
                              65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1960140IPR004330FAR1 DNA binding domain
PfamPF105512.7E-19263348IPR018289MULE transposase domain
PROSITE profilePS5096610.101544580IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-4552577IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MDEVSLNTEP VLDDETEEFE IDGDCAMTEF VGQSGVIEGE NPLPPAVGME FETYDDVYYF  60
YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK TEANKPRPET RTGCPAMIKF  120
RLMENKRWRV IEVELEHNHL IHARGGKFYK SHRNMTLGSK RPLQVDGAEV QKIRLFRTVI  180
VDTNEDGIPS VDENEFRNTA DQPGNQLNLK PGDAQAIHDL FAHLQLINPN FFYVMDLNER  240
GRLRNVFWAE ARCKAAYSYF GDIVSIDSTS LSDKYEVPLV VFAGLNHHGQ SVPLGCGLVA  300
GETIESFVWL LRAWLTYMVG RPPQTVLIGQ SKAMQTAVLD VFPRAAYCTP LSDIMKKFSD  360
ELGGLQEYEA IKASFTKAIS NASRVGEFVS AWEEMMVSHG IQGQKWLQTL YVDRKRWVPA  420
FLKDVFLAGI FEDKLSPFEG YLSKHTPLKE FVTNYVQALQ EIYQRESLAD MESRDPNCML  480
KSRFHFEAQL SKLYTSATFK KFQCEIEGMF SCLTTKQVRI DGAVITHVIQ EHRAEDDVRE  540
TRDYEVVLNM SDAEVVCDCG LFNSKGFLCR HALSVLSQNG VEEIPPQYIL PRWRKDIHRS  600
YVLDNGCHGI DVNNPVHRYD SLYKCAMRVV EEGQKSHHHH KFTMDALAEI LNKVCLEGDL  660
PG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169949.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A1U7VZI00.0A0A1U7VZI0_NICSY; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_009771778.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6