PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001370.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 337aa    MW: 36690.7 Da    PI: 7.2744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001370.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28.4e-34184241259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s++prsYYrCts++Cpvkk+vers +dp++v++tYeg+Hnh+
  Itr_sc001370.1_g00002.1 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCPVKKRVERSYQDPSIVITTYEGQHNHH 241
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-35168243IPR003657WRKY domain
SuperFamilySSF1182908.89E-30175243IPR003657WRKY domain
PROSITE profilePS5081132.799178243IPR003657WRKY domain
SMARTSM007741.9E-39183242IPR003657WRKY domain
PfamPF031061.4E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSEDLRDLYY HHPFQEDERS HAGFLFSGAA ATSQIHNTTT NNPHHAFLDP PSSYMSFTDH  60
LIGATEFGRP AGFGFSSSAD AAAFSAVKDE QKPSPMKAGD GGGGGGNNNA NETPVTPNSS  120
ISSSSTEAAG DEDSNKASKR DKQAVDASED GEDKKETKGK KKAEKKQRQP RFAFMTKSEV  180
DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT SQKCPVKKRV ERSYQDPSIV ITTYEGQHNH  240
HIPTNLRGTI AGMLPPSLLT PSPLLGAGPP PQISFPPELL AQMTPPHHLF AAHANPFAGA  300
GAGAAAFHPQ NLTQLQLPPD FGLLQDMVPP MFFKQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-261762431077Probable WRKY transcription factor 4
2lex_A6e-261762431077Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178112.11e-161PREDICTED: probable WRKY transcription factor 28
TrEMBLA0A068UDG71e-104A0A068UDG7_COFCA; Uncharacterized protein
STRINGXP_009760855.19e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-52WRKY DNA-binding protein 71