PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000816.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 997aa MW: 109445 Da PI: 5.3366

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000816.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.5e-29	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Itr_sc000816.1_g00004.1 588 AEKTISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.564	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-26	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.21E-20	901	988	No hit	No description
SMART	SM00666	4.0E-23	902	984	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.9E-24	902	983	No hit	No description
PROSITE profile	PS51745	24.764	902	984	IPR000270	PB1 domain
Pfam	PF00564	1.8E-16	903	983	IPR000270	PB1 domain
CDD	cd06407	2.11E-34	903	983	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MSEPDDEAPK SKEFFSPPRP LPEREPMMMM DLDLDASWTF EQIFAAAASN PNTPFVLSGS 60 DQPFSPLWGF PDDYEDRTAE NAAVGSIRLS DCHRLPPWDP DSVIEGVPGQ DEKRRLPPPF 120 LGLTTKDYLD GSCIIKERMT QALRYFKEST GERVLAQLWA PVKNGGRYIL TTSGQPFVLD 180 PNSNGLHQYR MMSLMYSFSV DGETDGVLGL PGRVFRQKLP EWTPNVQYYS IKEFPRLNHA 240 LNYNVRGTVA LPVFEPSGQS CIGVLELIMT SQKVNYAPEV DKVCKALEAV NLKSSEILDH 300 PSTQICNEGR QHALVEILEI LTVLCETYKL PLAQTWVPCR HRNVLADGGG LKKSCSSFDG 360 SCMGQVCMST TDVAFYVVDA HMWGFREACA EHHLQKGQGV AGRAFASQRS CYCEDITQFC 420 KTEYPLVHYA RMFGLASCFA ICLRSTHTGN DDYIMEFFLP PNGGDYSDQQ ALLDSLLLTL 480 KNHFKSLRVA SGNLLEHEWG SVEIINASVP SVEKKPDLMT ETHRFSPPQP AILPNGQLCP 540 DPLENKQLTP GQNTPNGGTL SEPPEAQNRA TVAVNIEGGK KEKKRGKAEK TISLDVLQQY 600 FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKRVI ESVQGADGAP 660 FTLSTIAPNS VPVAVGSISW PTTAIESNCQ NSPPSRPSES PEGKSEFLNH IEHGSHDQAE 720 PSNQILEGQV LGNHELPHQQ NGFAVGEGSN RSRTGSGSRE ESIGTPTSHG SCQASPSPGN 780 EPSPQNELVV SPTRDPAMEA LNTLGIACHQ PAREINLASA FASLDALVAE QFQKPFGGML 840 VEDAGSSHDL RNLCQAGEAQ FDERMPENSL THPPCSDAIP IDHITNAAER VPQHPARPEV 900 TSITIKATYG EDIIRFRLSL GSGIVKLQEE VAKRLKLELG TFEVKYLDDD HEWVLIACDA 960 DLQECIDISR SSGGNITRLL IQDIMPHLGS SCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MSEPDDEAPK SKEFFSPPRP LPEREPMMMM DLDLDASWTF EQIFAAAASN PNTPFVLSGS  60
DQPFSPLWGF PDDYEDRTAE NAAVGSIRLS DCHRLPPWDP DSVIEGVPGQ DEKRRLPPPF  120
LGLTTKDYLD GSCIIKERMT QALRYFKEST GERVLAQLWA PVKNGGRYIL TTSGQPFVLD  180
PNSNGLHQYR MMSLMYSFSV DGETDGVLGL PGRVFRQKLP EWTPNVQYYS IKEFPRLNHA  240
LNYNVRGTVA LPVFEPSGQS CIGVLELIMT SQKVNYAPEV DKVCKALEAV NLKSSEILDH  300
PSTQICNEGR QHALVEILEI LTVLCETYKL PLAQTWVPCR HRNVLADGGG LKKSCSSFDG  360
SCMGQVCMST TDVAFYVVDA HMWGFREACA EHHLQKGQGV AGRAFASQRS CYCEDITQFC  420
KTEYPLVHYA RMFGLASCFA ICLRSTHTGN DDYIMEFFLP PNGGDYSDQQ ALLDSLLLTL  480
KNHFKSLRVA SGNLLEHEWG SVEIINASVP SVEKKPDLMT ETHRFSPPQP AILPNGQLCP  540
DPLENKQLTP GQNTPNGGTL SEPPEAQNRA TVAVNIEGGK KEKKRGKAEK TISLDVLQQY  600
FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKRVI ESVQGADGAP  660
FTLSTIAPNS VPVAVGSISW PTTAIESNCQ NSPPSRPSES PEGKSEFLNH IEHGSHDQAE  720
PSNQILEGQV LGNHELPHQQ NGFAVGEGSN RSRTGSGSRE ESIGTPTSHG SCQASPSPGN  780
EPSPQNELVV SPTRDPAMEA LNTLGIACHQ PAREINLASA FASLDALVAE QFQKPFGGML  840
VEDAGSSHDL RNLCQAGEAQ FDERMPENSL THPPCSDAIP IDHITNAAER VPQHPARPEV  900
TSITIKATYG EDIIRFRLSL GSGIVKLQEE VAKRLKLELG TFEVKYLDDD HEWVLIACDA  960
DLQECIDISR SSGGNITRLL IQDIMPHLGS SCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169359.1	0.0	PREDICTED: protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1AWK0	0.0	M1AWK0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031945	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]