PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000713.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 364aa    MW: 40792.1 Da    PI: 6.1152
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000713.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19171221256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Itr_sc000713.1_g00010.1 171 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAYKLRGE 221
                              59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-31170228No hitNo description
Gene3DG3DSA:3.30.730.104.0E-32171229IPR001471AP2/ERF domain
SMARTSM003807.4E-38171234IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-23171229IPR016177DNA-binding domain
PROSITE profilePS5103222.932171228IPR001471AP2/ERF domain
PRINTSPR003675.6E-11172183IPR001471AP2/ERF domain
PfamPF008472.9E-12172221IPR001471AP2/ERF domain
PRINTSPR003675.6E-11194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAAARDRGKA KKAMEEEADE GREFERQQWR PVLEEASMSD RPLKKIRSPD HQSSSSSSSM  60
VPPPLSSSYS NSGPVFPFAF DGTQQLGSTV PLLHPQYHHQ TQQQQMISFS PQQQQSFAYP  120
PYFAGNLAPS QHNQQLMQYW NDSLNLSPRG RMIMSRFGHR PPVQPLNTTK LYRGVRQRHW  180
GKWVAEIRLP RNRTRLWLGT FDTAEDAAMA YDREAYKLRG ENARLNFPQL FIGKDRGGSA  240
STAPSSSSSS PTTPSKRLAS KGEDDAKKLP ATQEEESSEV TGSDEVQENV ESASSELVWN  300
EMAEAWLNAM PAGWGPTSPV WDDLDATNSL MLPSNLPFSD PNQQDHSTSP SSCPMRPFFP  360
NDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-20170228463ATERF1
3gcc_A7e-20170228463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192938.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A061E4171e-123A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX993821e-124(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.16e-55ERF family protein