PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000613.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 399aa    MW: 44733.4 Da    PI: 5.307
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000613.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19188238256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + +l+ge
  Itr_sc000613.1_g00014.1 188 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAMAYDREAFNLRGE 238
                              59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-32187247No hitNo description
Gene3DG3DSA:3.30.730.104.2E-32188246IPR001471AP2/ERF domain
PROSITE profilePS5103222.879188245IPR001471AP2/ERF domain
SMARTSM003804.1E-39188251IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23188246IPR016177DNA-binding domain
PRINTSPR003673.5E-11189200IPR001471AP2/ERF domain
PfamPF008474.2E-13189238IPR001471AP2/ERF domain
PRINTSPR003673.5E-11211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVAPEDGGKS KAAAVTEQTD SERDDQQWRQ VLEDDSMSSR PLKKMKSPEH KSSVQFQSQS  60
LPFPSSMAAY PPPPPPSSSS SSSSRLVFPF ALDGAEQSME RLQQLRWNNR NAIPLLNTAA  120
YQNQQSMVSF LRQRNADFPP YFAGDSVPLQ QHQQQLLRYW NDTLNLSPRG RLGQRPPPAA  180
MPVSTTKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAAMAYDR EAFNLRGENA  240
RLNFPELFLG KDKDPSASEN TPGSPKSPPP EAETPPPPPP PPPPEKKDDD DDDEAKKNSE  300
TAVTAAAAEQ SSEFNWGEMN EEWLNAIPAG WGPGSPVWDD LYITNNHFMP FNLPFSHLHQ  360
QEPQHSNDPQ KQDNPTAPSS SSSSSSSCPA KPFFWKDQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19187245463ATERF1
3gcc_A4e-19187245463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159091.11e-176PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA0A2R6QX351e-104A0A2R6QX35_ACTCH; Ethylene-responsive transcription factor
STRINGEOX993822e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-50ERF family protein