PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000464.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 133aa MW: 15240.5 Da PI: 8.6747

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000464.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.4	1.8e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++i+++s+gk+++y+s Itr_sc000464.1_g00003.1 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIVYASSGKMHDYCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.763	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-34	2	90	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.20E-41	2	80	No hit	No description
PRINTS	PR00404	4.1E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIVYAS SGKMHDYCSP 60 STSLVEMLDG YQKASGKKLW DAKHEEEDVV EELQFVWQQQ KEMGADMVRD YQSAEMGLTF 120 RVQPMQPNLH QAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-16	1	94	1	89	MEF2C
5f28_B	2e-16	1	94	1	89	MEF2C
5f28_C	2e-16	1	94	1	89	MEF2C
5f28_D	2e-16	1	94	1	89	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175389.1	1e-52	PREDICTED: floral homeotic protein PMADS 2-like isoform X1
Swissprot	Q07474	3e-51	MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBL	A0A0B0P6C1	7e-58	A0A0B0P6C1_GOSAR; Floral homeotic PMADS 2
STRING	XP_009803901.1	1e-49	(Nicotiana sylvestris)
STRING	XP_009608638.1	1e-49	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4680	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-46	MIKC_MADS family protein

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Kush A,Brunelle A,Shevell D,Chua NH The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]