PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000297.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 353aa    MW: 39146.1 Da    PI: 7.0774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000297.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.8e-33198255259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp++v++tYeg+Hnh+
  Itr_sc000297.1_g00008.1 198 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCTVKKRVERSYEDPTIVVTTYEGQHNHH 255
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-34182257IPR003657WRKY domain
SuperFamilySSF1182905.49E-29189257IPR003657WRKY domain
PROSITE profilePS5081131.927192257IPR003657WRKY domain
SMARTSM007741.7E-38197256IPR003657WRKY domain
PfamPF031068.1E-26198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGSGRINTFP FFGDDNSDHH NPSSSIYSSS DHHPPPSAPT QNLLHQEFLP SPFMSFTESL  60
QGSMDYHTLS NAFGMSCSSS EVVCTPTDHH HHHHQQQQQQ NQESSRKSSV SAGEAAGENI  120
PFVAANSSVS SSSSEAAVGD REEDSSKSNK DLLLPKGCED GDDKSTKINK GAAKKKGEKK  180
QREPRFAFMT KSEIDNLEDG YRWRKYGQKA VKNSPFPRSY YRCTSQKCTV KKRVERSYED  240
PTIVVTTYEG QHNHHCPATL RGNAVALLSP ASFLSPSPAA LMPNFHQDLL LNPMLSGGAP  300
NFQPSSMYGG YHHHHLGLNP HHYDHQITQS PVDQYTLFQD MVVSSLGHKQ EHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-28187258778Probable WRKY transcription factor 4
2lex_A8e-28187258778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193556.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ25e-52WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A328DQY21e-111A0A328DQY2_9ASTE; Uncharacterized protein
STRINGXP_009766292.14e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-47WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]