PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000154.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 334aa MW: 38016.9 Da PI: 4.9247

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000154.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.9	1.6e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++vavi+fs++g+l +y+ Itr_sc000154.1_g00001.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDVDVAVIMFSPSGRLSTYA 58 79***********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.7E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.025	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-30	2	83	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.26E-40	2	79	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD VDVAVIMFSP SGRLSTYAGH 60 KKSMEDILMR FLNLPEQDRG RLQNEEYLRR VLDKLKSESS DNAAPSPVNG ADSQIAEIQQ 120 QFEQCKSRLE EVEQQLLIYE CDPGEIMTLY EAQYRERIFE QNLNLVRQRK QILEEKFNAI 180 PNSQAPSEQL NLGLETTMNT IDFALMDNWL PAERDPHSQI FNFLDPNGFF PLRDEPGPVQ 240 QPMDSMVAPP PLPLHHVENA PLGDHRVASR AEADDMPRAG DFFGPINVSP WMTQYGGGAP 300 AANVPLPSTY PRDRGILEAF MSQFTNSPFN QDHI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
6byy_A	6e-19	1	90	1	90	MEF2 CHIMERA
6byy_B	6e-19	1	90	1	90	MEF2 CHIMERA
6byy_C	6e-19	1	90	1	90	MEF2 CHIMERA
6byy_D	6e-19	1	90	1	90	MEF2 CHIMERA
6c9l_A	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	5e-19	1	90	1	90	Myocyte-specific enhancer factor 2B
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152624.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
TrEMBL	A0A2G9HCX4	1e-103	A0A2G9HCX4_9LAMI; MADS box transcription factor
STRING	Solyc04g078300.2.1	5e-95	(Solanum lycopersicum)
STRING	XP_009629660.1	6e-95	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6183	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	6e-47	AGAMOUS-like 104