PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000096.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 364aa    MW: 40784.9 Da    PI: 4.5798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000096.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.8e-2180130256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r r +lg+f+taeeAa a+++a+ kl+ge
  Itr_sc000096.1_g00002.1  80 LYRGVRQRH-WGKWVAEIRLPKN---RSRLWLGTFDTAEEAAMAYDKAAYKLRGE 130
                              59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.44E-3479139No hitNo description
PROSITE profilePS5103223.55180137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3280138IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2380138IPR016177DNA-binding domain
SMARTSM003801.3E-3780143IPR001471AP2/ERF domain
PfamPF008473.7E-1481130IPR001471AP2/ERF domain
PRINTSPR003674.0E-118192IPR001471AP2/ERF domain
PRINTSPR003674.0E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKEIEPFLRS WQSISSSSSS WSSGMSFNQT GPIGLNQLTP SQILQIQLQY YQASPSCLSY  60
LSAKPVAMKQ AGTPLKLAKL YRGVRQRHWG KWVAEIRLPK NRSRLWLGTF DTAEEAAMAY  120
DKAAYKLRGE YATLNFPNLR LHFSHNFNPL PSSVEAKLDA IISQNQPKTG QPCFFTTKTE  180
PASYSSGGDT ECCYNQKETE PALYSSGDTE CYDQKETKLP SYSSGDTRCH YNPKETEPAS  240
YSSGGDTECY TKIETNVSYS GGDTGCYTQK EAEASYGGED TGYYTRNETE TTFYSGEDIG  300
CYAQKEIGIS YRSEDMEAGS SDQLSSSSPE SEITILDFLE PCDEFENFIL QKHPYVEIHD  360
WEAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2279137160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2AHT93e-61A0A2K2AHT9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s16690.13e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.14e-36ERF family protein