PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78558.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18806.5 Da    PI: 9.3483
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78558.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.7e-212264547
                  SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
        SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                  +k  rqvtfskRr+g++KK +ELS+LC+a+vav++fs+ g+++
  MLOC_78558.1 22 DKNSRQVTFSKRRAGLFKKCSELSILCGARVAVVVFSEAGNVF 64
                  5788************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-271069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-231078IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.5071070IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-171232IPR002100Transcription factor, MADS-box
PfamPF003198.6E-232264IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-173247IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-174768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVRPRGTTST GRHRIEMSLR PDKNSRQVTF SKRRAGLFKK CSELSILCGA RVAVVVFSEA  60
GNVFALGSPS MEAVLRLHDS APVPAADVDD REVLEEMFRA REATAEQVAS EVARMNSIAD  120
KVVKAQMGRR YWWEADVEAL GEDELPEFAR ALDRLRANVR RHADKLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-151199290Myocyte-specific enhancer factor 2B
1tqe_Q3e-151199290Myocyte-specific enhancer factor 2B
1tqe_R3e-151199290Myocyte-specific enhancer factor 2B
1tqe_S3e-151199290Myocyte-specific enhancer factor 2B
6c9l_A3e-151199290Myocyte-specific enhancer factor 2B
6c9l_B3e-151199290Myocyte-specific enhancer factor 2B
6c9l_C3e-151199290Myocyte-specific enhancer factor 2B
6c9l_D3e-151199290Myocyte-specific enhancer factor 2B
6c9l_E3e-151199290Myocyte-specific enhancer factor 2B
6c9l_F3e-151199290Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170509.11e-101agamous-like MADS-box protein AGL61
TrEMBLA0A287SPY11e-117A0A287SPY1_HORVV; Uncharacterized protein
TrEMBLM0Z7S41e-118M0Z7S4_HORVV; Uncharacterized protein
STRINGMLOC_78558.11e-119(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-22AGAMOUS-like 62