PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6156.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 303aa    MW: 33674.6 Da    PI: 6.0956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6156.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-162269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ + ++G g+W++++r  g+ R++k+c++rw +yl
      MLOC_6156.2 22 RGLWSPEEDEKLYNHIIRYGVGCWSSVPRLAGLERCGKSCRLRWINYL 69
                     788*******************************************97 PP
2Myb_DNA-binding47.63.8e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v ++k  G++ W+ Ia+ ++ gRt++++k++w++
      MLOC_6156.2  75 RGSFSQQEEDLIVSLHKIIGNR-WSQIASQLP-GRTDNEIKNFWNS 118
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-231572IPR009057Homeodomain-like
PROSITE profilePS5129424.4081773IPR017930Myb domain
SuperFamilySSF466891.03E-2819116IPR009057Homeodomain-like
SMARTSM007178.7E-132171IPR001005SANT/Myb domain
PfamPF002495.0E-142269IPR001005SANT/Myb domain
CDDcd001672.00E-112569No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2573124IPR009057Homeodomain-like
SMARTSM007174.8E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129419.24574124IPR017930Myb domain
PfamPF002491.6E-1375118IPR001005SANT/Myb domain
CDDcd001675.16E-1077117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRAMGREAAA AACSSNKPKL RRGLWSPEED EKLYNHIIRY GVGCWSSVPR LAGLERCGKS  60
CRLRWINYLR PDLKRGSFSQ QEEDLIVSLH KIIGNRWSQI ASQLPGRTDN EIKNFWNSCI  120
KKKLRQLSID STTHKPLNDA VAVAEPHDDC KQLVPGAEDR CFGGSGSGSD DLLAPHSPVD  180
CSFDPTSVTN VPTITMHMQD AYSLCDYGAT TYSAYTGGGG SSSNGTWTCG NGNVEPLPHM  240
DMFRDAAEPY PFDPSKFSQW QQQQAPDDHR GSTVFPIRSL SRDLPESCFE LARGALEDEF  300
DFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29181243108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6156.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-165HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192081.10.0myb-related protein Hv33-like
TrEMBLM0XN830.0M0XN83_HORVV; Uncharacterized protein
STRINGMLOC_6156.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-69myb domain protein 86