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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G037369.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25820.2 Da PI: 4.8949 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 125 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f t +Aaka++ a+ kl+g HL.SW.v1.0.G037369.1 125 HYRGVRRRP-WGKFAAEIRDP---NhKGSRVWLGTFNTDMDAAKAYDCAAFKLRG 175 7********.**********9...7667**********88*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 124 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-35 | 125 | 189 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.197 | 125 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 125 | 184 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-12 | 125 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-13 | 126 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-22 | 133 | 183 | No hit | No description |
PRINTS | PR00367 | 4.1E-13 | 165 | 185 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEASDEFLTL ELIRQYLLGD FTSTDDAFFT DVTTSEDYTP QFTTTISSSS SSYHFQPVKQ 60 EYSQSESESN SPISDNNPDQ FLDLIMVPKS ETGPHVNLAS SPESSKSSSQ KTTTVSAQDS 120 GERRHYRGVR RRPWGKFAAE IRDPNHKGSR VWLGTFNTDM DAAKAYDCAA FKLRGRKAIL 180 NFPLEAGLSD PPENTGRSRK KRKSGQDQEA PEPESFESGD QGCTWTKVFS E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-27 | 124 | 184 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094792.1 | 3e-62 | ethylene-responsive transcription factor ERF107 | ||||
TrEMBL | A0A2P5F3P4 | 1e-95 | A0A2P5F3P4_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_010094792.1 | 1e-61 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 6e-34 | ERF family protein |