PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G034529.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 361aa MW: 40151.2 Da PI: 9.3119

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G034529.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.5e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+++yL +k+++ +++ ++i +vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkd HL.SW.v1.0.G034529.1 15 LPPGFRFHPTDEELITFYLINKISDATFTG-RAIGDVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKD 102 79***********************999.89***********99999******************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ke++++ ++elvg+kktLvfy+grap+gek++Wvmheyr+ HL.SW.v1.0.G034529.1 103 KEIFNSvTSELVGMKKTLVFYRGRAPRGEKSNWVMHEYRI 142 9989999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-63	11	163	IPR003441	NAC domain
PROSITE profile	PS51005	60.107	15	163	IPR003441	NAC domain
Pfam	PF02365	5.5E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MSGSDGNINK DPEKLPPGFR FHPTDEELIT FYLINKISDA TFTGRAIGDV DLNKCEPWEL 60 PAKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNTGYWKTTG KDKEIFNSVT SELVGMKKTL 120 VFYRGRAPRG EKSNWVMHEY RINSKSAFRT SKDEWVVCRV FQKSAGAKKY PTTQSRTINP 180 YALDTGHPTM LPSPMMQLAG DPTQFLFARN NYNMTNPELA ELSRVLRAGG SGGGSSNGGL 240 NLPSIPSQYN YPVPGGGCLT ISGLNLNLGG PPTQPLFRPL PPHPQPPMQL NNPQPPMNLN 300 QHDINTSSMM SSTSGSFVHH HTSTNGYGTD MNNVPNGPNN NRSYMNVDHC MDLENYWPAY 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MSGSDGNINK DPEKLPPGFR FHPTDEELIT FYLINKISDA TFTGRAIGDV DLNKCEPWEL  60
PAKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNTGYWKTTG KDKEIFNSVT SELVGMKKTL  120
VFYRGRAPRG EKSNWVMHEY RINSKSAFRT SKDEWVVCRV FQKSAGAKKY PTTQSRTINP  180
YALDTGHPTM LPSPMMQLAG DPTQFLFARN NYNMTNPELA ELSRVLRAGG SGGGSSNGGL  240
NLPSIPSQYN YPVPGGGCLT ISGLNLNLGG PPTQPLFRPL PPHPQPPMQL NNPQPPMNLN  300
QHDINTSSMM SSTSGSFVHH HTSTNGYGTD MNNVPNGPNN NRSYMNVDHC MDLENYWPAY  360
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	15	169	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	15	169	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	15	169	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	15	169	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	15	169	20	174	NAC domain-containing protein 19
3swm_B	2e-54	15	169	20	174	NAC domain-containing protein 19
3swm_C	2e-54	15	169	20	174	NAC domain-containing protein 19
3swm_D	2e-54	15	169	20	174	NAC domain-containing protein 19
3swp_A	2e-54	15	169	20	174	NAC domain-containing protein 19
3swp_B	2e-54	15	169	20	174	NAC domain-containing protein 19
3swp_C	2e-54	15	169	20	174	NAC domain-containing protein 19
3swp_D	2e-54	15	169	20	174	NAC domain-containing protein 19
4dul_A	2e-54	15	169	17	171	NAC domain-containing protein 19
4dul_B	2e-54	15	169	17	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885188.1	1e-168	NAC domain-containing protein 79 isoform X3
TrEMBL	A0A2P5G1G0	0.0	A0A2P5G1G0_TREOI; NAC domain containing protein
STRING	cassava4.1_011442m	1e-162	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-102	NAC domain containing protein 38