PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033515.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SRS
Protein Properties Length: 272aa    MW: 30167.2 Da    PI: 8.5922
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033515.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70295.31.2e-29961557
                DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57
                          +++CqdCGnqakk+C+++RCRtCCks+gf+C+th+kstWvp ++rr+r+++  
  HL.SW.v1.0.G033515.1  9 SSRCQDCGNQAKKECVYMRCRTCCKSKGFQCQTHIKSTWVPLYRRRHRHHHRL 61
                          679*********************************************77654 PP
2DUF70265.81.5e-206112298153
                DUF702  98 keletsslPeevsseavfrcvrvss......vddgeeelaYqtavsigGhvfkGiLydqGle 153
                            e e++++P+ev+++a f+ vrvss      vd++++++aYqtavsigGh+fkGiLydqGl+
  HL.SW.v1.0.G033515.1  61 LEEEAQNFPPEVKATATFHVVRVSStvnvngVDQNHDQYAYQTAVSIGGHLFKGILYDQGLQ 122
                           5677889**************9975444444899**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-261064IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.2E-281253IPR006510Zinc finger, lateral root primordium type 1
PfamPF051424.0E-1764122IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016242.2E-1968121IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMMRQVSLSS RCQDCGNQAK KECVYMRCRT CCKSKGFQCQ THIKSTWVPL YRRRHRHHHR  60
LEEEAQNFPP EVKATATFHV VRVSSTVNVN GVDQNHDQYA YQTAVSIGGH LFKGILYDQG  120
LQPNTNTTSS SNYTVTGAGD RTTTSAGAGG FDHRNHDHDH HGQQQQQLPI DYFVSVKSHH  180
HDHQTGGVIG TVGSSASATY LTANISSSSL VANAEDHHHH HHHQNHHHQP LNMFGSSSTT  240
TTTTSTCPIL FPSSNAFINN PGMQFFPSRK S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5E5G34e-60A0A2P5E5G3_PARAD; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.16e-40SHI-related sequence3