PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G028465.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Nin-like

Protein Properties

Length: 1004aa MW: 110193 Da PI: 5.1666

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G028465.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.5e-29	592	642	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ HL.SW.v1.0.G028465.1 592 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 642 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	595	642	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.0E-24	901	994	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.8E-26	908	989	No hit	No description
SMART	SM00666	4.1E-26	908	990	IPR000270	PB1 domain
PROSITE profile	PS51745	26.202	908	990	IPR000270	PB1 domain
Pfam	PF00564	1.1E-20	909	989	IPR000270	PB1 domain
CDD	cd06407	3.72E-38	909	989	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MSESEEVAAT SFPPRSSKEV LMDFDLDLDN PWPMDQIAFV SNPMSPLLFS SSSTDHPFSP 60 LWAFTDAENE ENTTTTTTNN NNNSNNNNNN NNCSNTNSTN NINNTIKLGR LANSAVADSS 120 RFSCNSNSVA ERPAGNEENR SLPSPFSGLV PVDSPNGYYW IKERMTQALR YLKDSTDQHV 180 LAQVWAPVKN GSRYVLTTSG QPFVLDPDSN GLHQYRMVSL MYSFSVDGET NGVLGLPGRV 240 FRQKLPEWTP NVQYYSITEY PRLDHAQHYN VRGSLALPVF EPSGQSCVGV LELIMTSEKI 300 NYAPEVDKVC KALEAVNLRS AEILDHTDTQ ICNEGRQSAL TEILEILTAA CETHKLPMAQ 360 TWVPCMHRNV LAYGGGLKKN CTSIDGSCMG QVCMSTTEVA FYIVDARMWG FREACLEHHL 420 QKGQGVAGRA FYSRNLCFSS DITQFCKNEY PLVHYAQFFL PPNTNPSEQH TLLGSLLATI 480 KKHFQSLKIA SGIELEEEGF VEVVKVSATG GLESNFECIR IPQIAESPPG PCSLPNGGDM 540 VQRDLLKPQL TVGHDAGNGG QDAVHDGGNM NHVSVSDNKE TKKSERKRGK TEKSISLEVL 600 QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE 660 GAFGLTPLAT SPLPVAVTSV PRPSTSNGTI QQNSPCHVPC DLPLERKDSP TNSSSRREGH 720 AEIEDQLQGG GISIQKDLIH ENSGFYLPEN NRGSNHSKTG SGSREVSGGT PTSHGSCQGS 780 PANGSMMLKD PFAYSIHEQC IKVEGSPESA LQPTDGYIFS VPDALVTTES QEPFGGMLVE 840 DAGSSKDLRN LCHATDAILD ESVPEYCWMN PPPPPPPPCS EFAPNDTTTD IIITQTQPNV 900 KVSQEMRSVT IKATYREDII RFRLSLSCNI VELREEVAKR LKLEVGTFDI KYMDDDQEWV 960 LIACDADLQE CMDVCRSSGS NMIRLLIHDI MPNLGSSCES TEE*

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MSESEEVAAT SFPPRSSKEV LMDFDLDLDN PWPMDQIAFV SNPMSPLLFS SSSTDHPFSP  60
LWAFTDAENE ENTTTTTTNN NNNSNNNNNN NNCSNTNSTN NINNTIKLGR LANSAVADSS  120
RFSCNSNSVA ERPAGNEENR SLPSPFSGLV PVDSPNGYYW IKERMTQALR YLKDSTDQHV  180
LAQVWAPVKN GSRYVLTTSG QPFVLDPDSN GLHQYRMVSL MYSFSVDGET NGVLGLPGRV  240
FRQKLPEWTP NVQYYSITEY PRLDHAQHYN VRGSLALPVF EPSGQSCVGV LELIMTSEKI  300
NYAPEVDKVC KALEAVNLRS AEILDHTDTQ ICNEGRQSAL TEILEILTAA CETHKLPMAQ  360
TWVPCMHRNV LAYGGGLKKN CTSIDGSCMG QVCMSTTEVA FYIVDARMWG FREACLEHHL  420
QKGQGVAGRA FYSRNLCFSS DITQFCKNEY PLVHYAQFFL PPNTNPSEQH TLLGSLLATI  480
KKHFQSLKIA SGIELEEEGF VEVVKVSATG GLESNFECIR IPQIAESPPG PCSLPNGGDM  540
VQRDLLKPQL TVGHDAGNGG QDAVHDGGNM NHVSVSDNKE TKKSERKRGK TEKSISLEVL  600
QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE  660
GAFGLTPLAT SPLPVAVTSV PRPSTSNGTI QQNSPCHVPC DLPLERKDSP TNSSSRREGH  720
AEIEDQLQGG GISIQKDLIH ENSGFYLPEN NRGSNHSKTG SGSREVSGGT PTSHGSCQGS  780
PANGSMMLKD PFAYSIHEQC IKVEGSPESA LQPTDGYIFS VPDALVTTES QEPFGGMLVE  840
DAGSSKDLRN LCHATDAILD ESVPEYCWMN PPPPPPPPCS EFAPNDTTTD IIITQTQPNV  900
KVSQEMRSVT IKATYREDII RFRLSLSCNI VELREEVAKR LKLEVGTFDI KYMDDDQEWV  960
LIACDADLQE CMDVCRSSGS NMIRLLIHDI MPNLGSSCES TEE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028564.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2P5B855	0.0	A0A2P5B855_PARAD; NIN-like transcription factor
STRING	XP_010107269.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]