PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001421.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 519aa    MW: 58157.6 Da    PI: 6.3806
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001421.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.8e-084394771854
                           HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  HL.SW.v1.0.G001421.1 439 MFQNflHPYPKDAEKHLLAVKSGLTRNQVSNWFINARVR 477
                           5887779******************************88 PP
2BELL76.15.2e-25309376270
                  BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                           r++ + k+akLlsll+ Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  ++ L+++i++
  HL.SW.v1.0.G001421.1 309 RRQFETKRAKLLSLLQLVDDRYNQCLDEIHTVVSAFHAATELDP-QMHARFALQTISVLYKGLRERISK 376
                           678899**************************************.**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-32238376IPR006563POX domain
PfamPF075266.7E-29243375IPR006563POX domain
PROSITE profilePS5007111.078418481IPR001356Homeobox domain
CDDcd000867.14E-10421482No hitNo description
SMARTSM003891.5E-5421485IPR001356Homeobox domain
SuperFamilySSF466893.17E-15423489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25424487IPR009057Homeodomain-like
PfamPF059201.1E-14438477IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MENNQAFNIT QEMIMTSRND LTAMNSSFVL QSYLDDFSYS NPLFYSYKRS FSRDEASSLG  60
GVGSSSSAMC TSTELQEEAA KFMAAKAAAA AGHGLQENLN NLAISVPQMY SSDDVISGFV  120
SNENNNNSYV TYNNQWGDVE LVGKTSEFHQ TFDPNVWNSN NNHNGSSDFS NELSLSLATS  180
QPSVITGMAT TIPGQCSDMS RSAALPARNT ETVLVSEQTS CNNNNKVLSP SFGSYRPLQL  240
SQVILGSRYL SAAQEILAHF ASFSLENIGH DHSSSSYLMN SCSLSTMSPM DSTSDGGRLE  300
GETESESHRR QFETKRAKLL SLLQLVDDRY NQCLDEIHTV VSAFHAATEL DPQMHARFAL  360
QTISVLYKGL RERISKYCLA MGATSFDQLG RESSGSDKSF ETSFIQKQWA LQQLKKKDQL  420
WRPQRGLPER SVSVLRAWMF QNFLHPYPKD AEKHLLAVKS GLTRNQVSNW FINARVRLWK  480
PMIEEMYAEL NRRKENNNQR ISINDNNNNN INQIQRYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14427485563Homeobox protein Meis2
3k2a_B2e-14427485563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097078.20.0homeobox protein ATH1
RefseqXP_024021825.10.0homeobox protein ATH1
SwissprotP487311e-107ATH1_ARATH; Homeobox protein ATH1
TrEMBLW9RE350.0W9RE35_9ROSA; Homeobox protein ATH1
STRINGXP_010097078.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-98homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]