PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD73260.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family HSF
Protein Properties Length: 211aa    MW: 23635.6 Da    PI: 9.8851
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD73260.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36231152103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed+++++++sws++g+sfvv++++efa+++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll +i+
    KDD73260.1  23 FLIKTYDLVEDPATDDVVSWSTDGQSFVVWKPNEFADTLLPQHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFVAGRRDLLGEIH 110
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    KDD73260.1 111 RRKPS 115
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-3914106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6019112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-3519112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-202346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3223112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-207486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNTRRGGQPP REATRTSAPP PPFLIKTYDL VEDPATDDVV SWSTDGQSFV VWKPNEFADT  60
LLPQHFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEHFVA GRRDLLGEIH RRKPSAAERS  120
GASGAARDSG QQRAIEVGHY GGLAAEVETL KRDKGLLMQE VIRLRQRQQA ADSELAAVHA  180
RLGLTEQRQQ HMIAFLSKAM QHPALVAQLG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-23231124104Putative transcription factor
5d5x_B3e-23231124104Putative transcription factor
5d5x_E3e-23231124104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396796.12e-88Heat stress transcription factor A-1d
SwissprotQ9LQM73e-74HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A059LGL71e-154A0A059LGL7_9CHLO; Heat shock factor-like DNA-binding protein (Fragment)
STRINGA0A087SDW47e-88(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.24e-73heat shock factor 3
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]