PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han008746

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

Dof

Protein Properties

Length: 445aa MW: 48393.2 Da PI: 4.6991

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S56996492	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.7e-38	113	173	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+ Han008746 113 PDKILPCPRCNSMDTKFCYXNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKTSQ 173 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-31	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.295	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MSDPAIKLFG KTIQLPDDAD VDAVNTEDPP PSDDDDDCKS DGDCKGQPDE KPVDKEEEIT 60 HSSISEXVTE PNASSTLNEN PTTTLSAENE SATXKVSKSE EEQSEQEKTL KKPDKILPCP 120 RCNSMDTKFC YXNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK TSQSQYRQIT 180 VTEPVPGDLN NTLLKPNGTV LTFGSDAPLC ESMASVLKIA DKTMRQDSFR KPEDIIIPGP 240 SSNDDNTNRP SATGPAFCPP GFPGAPWPYP WPPQMGPAFC PPGFPMPFYP AAPYWGCAIP 300 VPXPSSGPGL SPGPWSMQWV PHPSSYHPAP PVTYAVSPSS PISPTLGKHS RAENGEDEII 360 KENEEEKSXW VPKTLRIDDP EEAAKSSIWA TXGIKNDRTT SGNGGGVFKA FQSKSEDKSP 420 IKEASPALQA NPAALSRSLN FQESS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MSDPAIKLFG KTIQLPDDAD VDAVNTEDPP PSDDDDDCKS DGDCKGQPDE KPVDKEEEIT  60
HSSISEXVTE PNASSTLNEN PTTTLSAENE SATXKVSKSE EEQSEQEKTL KKPDKILPCP  120
RCNSMDTKFC YXNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK TSQSQYRQIT  180
VTEPVPGDLN NTLLKPNGTV LTFGSDAPLC ESMASVLKIA DKTMRQDSFR KPEDIIIPGP  240
SSNDDNTNRP SATGPAFCPP GFPGAPWPYP WPPQMGPAFC PPGFPMPFYP AAPYWGCAIP  300
VPXPSSGPGL SPGPWSMQWV PHPSSYHPAP PVTYAVSPSS PISPTLGKHS RAENGEDEII  360
KENEEEKSXW VPKTLRIDDP EEAAKSSIWA TXGIKNDRTT SGNGGGVFKA FQSKSEDKSP  420
IKEASPALQA NPAALSRSLN FQESS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021973618.1	0.0	cyclic dof factor 2-like isoform X1
TrEMBL	E3TPX7	0.0	E3TPX7_HELAN; Cycling DOF factor-like 1
STRING	VIT_14s0108g00980.t01	1e-160	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-80	cycling DOF factor 2

Publications ? help Back to Top
Blackman BK, et al. Contributions of flowering time genes to sunflower domestication and improvement. Genetics, 2011. 187(1): p. 271-87 [PMID:20944017]