PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008115
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GRAS
Protein Properties Length: 153aa    MW: 17277.1 Da    PI: 7.1428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-3132PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.37.3e-46231531133
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA++v+sg++e a+ +L ++s+lasp+gd+mqR+a+yf+eALa+r++++++++yka+++++ s     e++ ++k+f++ +P+lk++++++Nq
  Han008115  23 LIHLLLTCAKHVASGNFEHANIALDQISHLASPEGDTMQRIASYFAEALANRILKTWPGIYKAVHSTKIS--FAPENILVRKMFFDYFPYLKIAFVITNQ 120
                689*************************************************************999887..599************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                 I ea+ege++vH++D+++++++QW aLl+ L+
  Han008115 121 VIIEAMEGEKMVHVVDLNAGEPTQWRALLRDLS 153
                *****************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.0391153IPR005202Transcription factor GRAS
PfamPF035142.5E-4323153IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSGMGSPYPW LKELKSEERG LCLIHLLLTC AKHVASGNFE HANIALDQIS HLASPEGDTM  60
QRIASYFAEA LANRILKTWP GIYKAVHSTK ISFAPENILV RKMFFDYFPY LKIAFVITNQ  120
VIIEAMEGEK MVHVVDLNAG EPTQWRALLR DLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-2071532150Protein SCARECROW
5b3h_D9e-2071532150Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022009018.11e-109scarecrow-like protein 3
SwissprotQ9LPR82e-64SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A251SFH01e-108A0A251SFH0_HELAN; Putative scarecrow-like 3
STRINGXP_009793219.11e-81(Nicotiana sylvestris)
STRINGXP_009627602.18e-82(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-67scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]