![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Han007790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 18772 Da PI: 4.5823 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.4 | 6.2e-16 | 26 | 98 | 23 | 95 |
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 p+++++++ +v k FG+ + ++++++p+++r+++++sl++eA r+ +Pv+Ga+g++++++++l+q+ + ++ Han007790 26 PEAKARATLFVSKSFGRGDLFNFISSVPTHKRNALFQSLLFEAVGRTINPVNGAIGLLSTGNWHLCQAGVRTV 98 7888999***********************************************************9977665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.599 | 1 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-13 | 26 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MVAESYESDA ATPVSYALVX DWIDSPEAKA RATLFVSKSF GRGDLFNFIS SVPTHKRNAL 60 FQSLLFEAVG RTINPVNGAI GLLSTGNWHL CQAGVRTVLA GGTPAVLMNT SKVPETDESS 120 GVSEATGELS AMVIGNQIPK NLLLTSSSGG DEQSFSAVPA MSFRCSDGEE PKLLNLLV |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021983470.1 | 1e-111 | LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 8e-33 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A251TYY6 | 1e-110 | A0A251TYY6_HELAN; Putative LOB domain-containing protein | ||||
STRING | XP_010092590.1 | 4e-38 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37540.1 | 3e-35 | LOB domain-containing protein 39 |