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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han006448 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||||||
Protein Properties | Length: 240aa MW: 26984.8 Da PI: 10.0156 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.3 | 1.7e-54 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +ppGfrFhPtdeel+++yL +kv ++++ + ++i+evd++k+ePw+Lpk +k + kewyfF+ +dkky+tg r+nrat++gyWkatgkdke+ + ++ lv Han006448 16 MPPGFRFHPTDEELITHYLSNKVVDNNFVA-KAIAEVDMNKIEPWELPKLAKLGGKEWYFFCVNDKKYPTGLRTNRATAAGYWKATGKDKEISR-GKLLV 113 79*************************999.89***************8888899*************************************99.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy grapkgekt+Wv+heyrle Han006448 114 GMKKTLVFYMGRAPKGEKTNWVIHEYRLE 142 ***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-60 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.272 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEKLSGHGQE EDQMDMPPGF RFHPTDEELI THYLSNKVVD NNFVAKAIAE VDMNKIEPWE 60 LPKLAKLGGK EWYFFCVNDK KYPTGLRTNR ATAAGYWKAT GKDKEISRGK LLVGMKKTLV 120 FYMGRAPKGE KTNWVIHEYR LEGKSLLSNL PRSAKNEWVN CRVVHKTSGG KKLHISDLTR 180 TDSGGVATSL PPLESPQIIP NLSXSIHVPC FSIRSNSKHS KNMLNISSQP ISTQSIPFVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-55 | 9 | 172 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-55 | 9 | 172 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-55 | 9 | 172 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-55 | 9 | 172 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022012914.1 | 1e-155 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLR3 | 1e-106 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A251SC19 | 1e-154 | A0A251SC19_HELAN; Putative NAC domain containing protein | ||||
STRING | XP_010258290.1 | 1e-106 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 1e-107 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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