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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27514.3 Da PI: 8.9287 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.5 | 1.9e-51 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+evd++k++Pw+Lp +e +fFs+++ ky++g+r+nrat sgyWkatg dk+++++ ++++ Han006317 14 LPPGFRFHPTDEELVVQYLKRKVQAFPLPA-SIIPEVDVCKSDPWELPGD---CGQERFFFSTKEVKYPNGNRSNRATVSGYWKATGLDKQIVTSkNNQV 109 79****************************.89***************44...45799*********************************998757888 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+g+ p+g++tdW+mheyrl Han006317 110 VGMKKTLVFYRGKPPNGSRTDWIMHEYRL 138 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-60 | 10 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.334 | 14 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-27 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVQAFP LPASIIPEVD VCKSDPWELP 60 GDCGQERFFF STKEVKYPNG NRSNRATVSG YWKATGLDKQ IVTSKNNQVV GMKKTLVFYR 120 GKPPNGSRTD WIMHEYRLAT PQLNNPAQGM EKWVICRIFL KKRGSNANKI DDEKERETIG 180 IVSDCKPVKS KPIFYDFMAT SKKRRTDLNL MPVSSSSGSS GITDDGSCEE HEEDSSNVDD 240 VSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-53 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-53 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-53 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-53 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-53 | 12 | 169 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-53 | 12 | 169 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-53 | 12 | 169 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021997237.1 | 0.0 | NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 7e-97 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A251T3H5 | 1e-180 | A0A251T3H5_HELAN; Putative NAC domain containing protein 83 | ||||
STRING | cassava4.1_014491m | 1e-111 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-98 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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