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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||
Protein Properties | Length: 245aa MW: 26601.5 Da PI: 9.4423 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.4 | 5.7e-09 | 120 | 143 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + C+f+ + G C++G+rC+++H+ Han006261 120 KDKVCNFWIQ-GSCSFGERCRYMHS 143 5678******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.15 | 22 | 47 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.38 | 22 | 48 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 119 | 143 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 120 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-6 | 120 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-6 | 120 | 143 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 4.58E-11 | 142 | 230 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.8E-11 | 144 | 229 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 2.9E-4 | 148 | 187 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.616 | 155 | 196 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 12.605 | 155 | 196 | IPR017986 | WD40-repeat-containing domain |
PROSITE pattern | PS00678 | 0 | 174 | 188 | IPR019775 | WD40 repeat, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDYDGGKRVF NRLGPTQPQT DNRNQKVCYH WRAGNCSRFP CPFLHRELSA PVNGTTSSSS 60 SSKRSHGFDN DQRSAVARRG GSNLNTWGRG GGRGGNVINN NNNNVNSRGG GTGTGVGVKK 120 DKVCNFWIQG SCSFGERCRY MHSWCTGGFG MLTQLEGHKK VVSGIALPAG SDKLYTGSRD 180 ETVRVWDCQS GQCAGVINLS GEVGCMLSEG PWMFVGLPNL XKAWNVQTSA ELSLNGPVWQ 240 SILWL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022001286.1 | 1e-139 | zinc finger CCCH domain-containing protein 48-like | ||||
Swissprot | Q9FNZ2 | 3e-81 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A251SSG7 | 1e-137 | A0A251SSG7_HELAN; Putative zinc finger CCCH domain-containing protein 17 | ||||
STRING | Solyc03g026350.2.1 | 3e-91 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 5e-77 | zinc finger WD40 repeat protein 1 |