PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006117
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 249aa    MW: 26724 Da    PI: 6.2797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32079607PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
        NAM  40 ykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                 +++P  +  +++   e+e + Fs+++ ky++g+++nrat sgyWkatg 
                45555544324444567899****************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA: diphosphate-binding fold
SuperFamilySSF525181.65E-6138212IPR029061Thiamin diphosphate-binding fold
PfamPF027794.9E-4439210IPR005475Transketolase-like, pyrimidine-binding domain
SMARTSM008614.2E-5440214IPR005475Transketolase-like, pyrimidine-binding domain
CDDcd070363.14E-10144210No hitNo description
PROSITE profilePS5100511.818169249IPR003441NAC domain
SuperFamilySSF1019413.01E-8198247IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
3D Structure ? help Back to Top
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ni4_B4e-803621211187Pyruvate dehydrogenase E1 component: Beta subunit
1ni4_D4e-803621211187Pyruvate dehydrogenase E1 component: Beta subunit
2ozl_B4e-803621211187Pyruvate dehydrogenase E1 component subunit beta
2ozl_D4e-803621211187Pyruvate dehydrogenase E1 component subunit beta
6cer_B3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cer_D3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cer_F3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cer_H3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cfo_B4e-803621211187Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cfo_D4e-803621211187Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, immature rosettes, and mature rosettes. {ECO:0000269|PubMed:8061040}.
Functional Description ? help Back to Top
Source Description
UniProtThe pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976252.11e-147pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1
RefseqXP_021976253.11e-147pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1
SwissprotQ387991e-118ODPB1_ARATH; Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
TrEMBLA0A251U4Q11e-146A0A251U4Q1_HELAN; Pyruvate dehydrogenase E1 component subunit beta
STRINGXP_008459895.11e-124(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.24e-14NAC domain containing protein 41
Publications ? help Back to Top
  1. Kruft V,Eubel H,Jänsch L,Werhahn W,Braun HP
    Proteomic approach to identify novel mitochondrial proteins in Arabidopsis.
    Plant Physiol., 2001. 127(4): p. 1694-710
  2. Tamaoki M, et al.
    Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression.
    Plant Mol. Biol., 2003. 53(4): p. 443-56
  3. Wienkoop S, et al.
    Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.
    Rapid Commun. Mass Spectrom., 2004. 18(6): p. 643-50
  4. LeClere S,Rampey RA,Bartel B
    IAR4, a gene required for auxin conjugate sensitivity in Arabidopsis, encodes a pyruvate dehydrogenase E1alpha homolog.
    Plant Physiol., 2004. 135(2): p. 989-99
  5. Brugière S, et al.
    The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions.
    Phytochemistry, 2004. 65(12): p. 1693-707
  6. Finkemeier I, et al.
    The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress.
    J. Biol. Chem., 2005. 280(13): p. 12168-80
  7. Alexeyenko A,Millar AH,Whelan J,Sonnhammer EL
    Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis.
    Trends Genet., 2006. 22(11): p. 589-93
  8. Geisler-Lee J, et al.
    A predicted interactome for Arabidopsis.
    Plant Physiol., 2007. 145(2): p. 317-29
  9. Hajduch M, et al.
    Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
    Plant Physiol., 2010. 152(4): p. 2078-87
  10. Ge W, et al.
    Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen.
    Biochim. Biophys. Acta, 2011. 1814(12): p. 1964-73
  11. Carrie C,Venne AS,Zahedi RP,Soll J
    Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(9): p. 2691-708
  12. Luethy MH,Miernyk JA,Randall DD
    The nucleotide and deduced amino acid sequences of a cDNA encoding the E1 beta-subunit of the Arabidopsis thaliana mitochondrial pyruvate dehydrogenase complex.
    Biochim. Biophys. Acta, 1994. 1187(1): p. 95-8