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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 26724 Da PI: 6.2797 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28 | 6.3e-09 | 199 | 248 | 40 | 88 |
NAM 40 ykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +++P + +++ e+e + Fs+++ ky++g+++nrat sgyWkatg Han006117 199 RDLDPVVFLeNELLDCEQERFLFSTKEVKYPNGNQSNRATLSGYWKATGL 248 45555544324444567899****************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.970 | 7.8E-86 | 38 | 213 | IPR029061 | Thiamin diphosphate-binding fold |
SuperFamily | SSF52518 | 1.65E-61 | 38 | 212 | IPR029061 | Thiamin diphosphate-binding fold |
Pfam | PF02779 | 4.9E-44 | 39 | 210 | IPR005475 | Transketolase-like, pyrimidine-binding domain |
SMART | SM00861 | 4.2E-54 | 40 | 214 | IPR005475 | Transketolase-like, pyrimidine-binding domain |
CDD | cd07036 | 3.14E-101 | 44 | 210 | No hit | No description |
PROSITE profile | PS51005 | 11.818 | 169 | 249 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-8 | 198 | 247 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLGIVRRNVG GAGGLSSQGF GRLRPVASAI RNYSSGGKEM TVRDALNSAL DEEMAADPNV 60 FVMGEEVGEY QGAYKITKGL LDKYGPERVL DTPITEAXVA GIGVGSAYHG LKPVKEFMTF 120 NFSMQAIDHV INSAAKSNYM SAGQINVPIV FRGPNGPAAG VGAQHSQCYG AWYGSVPGLK 180 VLVPYSSEDA RGLLKAAIRD LDPVVFLENE LLDCEQERFL FSTKEVKYPN GNQSNRATLS 240 GYWKATGLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ni4_B | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component: Beta subunit |
1ni4_D | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component: Beta subunit |
2ozl_B | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta |
2ozl_D | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta |
6cer_B | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
6cer_D | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
6cer_F | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
6cer_H | 3e-80 | 36 | 212 | 1 | 177 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
6cfo_B | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
6cfo_D | 4e-80 | 36 | 212 | 11 | 187 | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.3460 | 0.0 | embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, immature rosettes, and mature rosettes. {ECO:0000269|PubMed:8061040}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021976252.1 | 1e-147 | pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 | ||||
Refseq | XP_021976253.1 | 1e-147 | pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 | ||||
Swissprot | Q38799 | 1e-118 | ODPB1_ARATH; Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial | ||||
TrEMBL | A0A251U4Q1 | 1e-146 | A0A251U4Q1_HELAN; Pyruvate dehydrogenase E1 component subunit beta | ||||
STRING | XP_008459895.1 | 1e-124 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 4e-14 | NAC domain containing protein 41 |