PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006107
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 250aa    MW: 28450.4 Da    PI: 4.2819
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-40798PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.94.9e-2025178128
        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                t +gyWkatgkd+ +++ k++ vg+kktLv+y+grap+g++tdWvmhey++
  Han006107   2 TMNGYWKATGKDRIIKR-KSSSVGIKKTLVYYHGRAPSGQRTDWVMHEYTM 51 
                678**********9999.8999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.924174IPR003441NAC domain
PfamPF023654.5E-9350IPR003441NAC domain
SuperFamilySSF1019412.62E-24474IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
XTMNGYWKAT GKDRIIKRKS SSVGIKKTLV YYHGRAPSGQ RTDWVMHEYT MDEEELKRCP  60
VAQEHYVLYK IFKKSGAGPK NGEQYGAPFV EEEWNDEDCI DCLDVDSLLV QKPNPVPLYE  120
FENTSTREEG DEGIGLSNDM IEFLNKIIDE PDILPPDPKI LEKNGNVLLE GSSSQVEKDF  180
LELDDLVGLD TRISNSVTDF YSISDFDFYH ESQGVYNMGH LEYGPGLGPE TWAVRMEVVN  240
NGHELHDELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-1748095171NO APICAL MERISTEM PROTEIN
1ut4_B9e-1748095171NO APICAL MERISTEM PROTEIN
1ut7_A9e-1748095171NO APICAL MERISTEM PROTEIN
1ut7_B9e-1748095171NO APICAL MERISTEM PROTEIN
3swm_A9e-1748098174NAC domain-containing protein 19
3swm_B9e-1748098174NAC domain-containing protein 19
3swm_C9e-1748098174NAC domain-containing protein 19
3swm_D9e-1748098174NAC domain-containing protein 19
3swp_A9e-1748098174NAC domain-containing protein 19
3swp_B9e-1748098174NAC domain-containing protein 19
3swp_C9e-1748098174NAC domain-containing protein 19
3swp_D9e-1748098174NAC domain-containing protein 19
4dul_A9e-1748095171NAC domain-containing protein 19
4dul_B9e-1748095171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022039791.11e-176NAC domain-containing protein 17-like isoform X1
RefseqXP_022039792.11e-177NAC domain-containing protein 17-like isoform X2
SwissprotQ9XIC52e-49NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A251UTU41e-175A0A251UTU4_HELAN; Putative NAC domain-containing protein
STRINGPOPTR_0005s22180.13e-48(Populus trichocarpa)
STRINGXP_002527114.11e-48(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-51NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]