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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27920.9 Da PI: 4.8559 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.6 | 1.7e-14 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+ a a++ a+++++g Han005922 49 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFANPEMPACAHDVAALSIKG 99 68*****998.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-7 | 49 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-18 | 50 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-30 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.061 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 50 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-12 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.83E-28 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 9.2E-12 | 89 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAESSTTALP DPFPKQPESL EPNPKRLKRV RDDPDHEDGS SNTNNSKHPV YRGVRMRAWG 60 KWVSEIREPK KKSRIWLGTF ANPEMPACAH DVAALSIKGK SAILNFPELK HLLPRPESCT 120 PRDIQAAATK AASMDHLNPT TAPSTPSTSS SSSYSAASTL TSSSSTTSLV MSDEVSTGAP 180 TTTAEELCEI VELPSLGTSY DSTESRDDFV FVDSVWDYYS SPPWPSDYDV GYFGGEPPAN 240 VVSSGGFFFD VLLWQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 38 | 107 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021990459.1 | 1e-157 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 9e-53 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A251TQT2 | 1e-156 | A0A251TQT2_HELAN; Putative integrase-type DNA-binding superfamily protein | ||||
STRING | XP_009782186.1 | 2e-65 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-52 | ERF family protein |
Publications ? help Back to Top | |||
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