PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005922
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 256aa    MW: 27920.9 Da    PI: 4.8559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-11909PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-144999155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+ a a++ a+++++g
  Han005922 49 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFANPEMPACAHDVAALSIKG 99
               68*****998.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-74999IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-1850107IPR016177DNA-binding domain
SMARTSM003804.5E-3050113IPR001471AP2/ERF domain
PROSITE profilePS5103221.06150107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2850108IPR001471AP2/ERF domain
PRINTSPR003679.2E-125162IPR001471AP2/ERF domain
CDDcd000183.83E-2851109No hitNo description
PRINTSPR003679.2E-1289109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAESSTTALP DPFPKQPESL EPNPKRLKRV RDDPDHEDGS SNTNNSKHPV YRGVRMRAWG  60
KWVSEIREPK KKSRIWLGTF ANPEMPACAH DVAALSIKGK SAILNFPELK HLLPRPESCT  120
PRDIQAAATK AASMDHLNPT TAPSTPSTSS SSSYSAASTL TSSSSTTSLV MSDEVSTGAP  180
TTTAEELCEI VELPSLGTSY DSTESRDDFV FVDSVWDYYS SPPWPSDYDV GYFGGEPPAN  240
VVSSGGFFFD VLLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1638107272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021990459.11e-157ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD39e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A251TQT21e-156A0A251TQT2_HELAN; Putative integrase-type DNA-binding superfamily protein
STRINGXP_009782186.12e-65(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]