PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han005748

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

M-type_MADS

Protein Properties

Length: 262aa MW: 29829 Da PI: 9.1927

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-11219	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.9	1.5e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en snrqvtfskRrngilKKA+ELSvLCd+++ +++fs+tgk Han005748 9 KRLENISNRQVTFSKRRNGILKKAKELSVLCDIDIILLLFSPTGK 53 689*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.885	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-27	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.04E-27	2	82	No hit	No description
PRINTS	PR00404	1.6E-21	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-21	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-21	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-21	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGRVKLKIKR LENISNRQVT FSKRRNGILK KAKELSVLCD IDIILLLFSP TGKPTLFTGQ 60 RSNIDEVIAK FARLTPQERA KRKLESLEAL KKAFKKLDHD VNIQDFAGAS SQSAEDLTNH 120 AMMLRSQLDD MHKRLSYWSN PDKIDNIEHL KQMEDSLRES LDRIRIHKDN FGQQKLMPID 180 CTSQFQNGLH LPLMMASTQE DQTLSWLPDN ENQNLMLPEK QGYIPQRDGE CSGVSIPNYC 240 LFGTGKQLEM GVSGKLTGHT GX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-16	1	92	1	90	MEF2C
5f28_B	3e-16	1	92	1	90	MEF2C
5f28_C	3e-16	1	92	1	90	MEF2C
5f28_D	3e-16	1	92	1	90	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022039160.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_022039161.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_022039163.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_022039164.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	1e-100	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A251US47	0.0	A0A251US47_HELAN; Putative transcription factor, MADS-box
STRING	VIT_17s0000g06340.t01	1e-137	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-102	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]