PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005514
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30777.4 Da    PI: 8.6919
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-44919PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Han005514  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
               79***********************************************96 PP
2K-box98.97.2e-33811738100
      K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                s+ e+++++ ++e+ +Lk+++e Lqr+qR+llGedL +L+ keL+qLe+qLe+sl+kiRs+K++ +l+q+ elq+ke+ l e+nkaLr+klee
  Han005514  81 SQPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLNTKELEQLEHQLETSLRKIRSTKTQSMLNQLAELQRKEQVLAETNKALRNKLEE 173
                4678999***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
CDDcd002655.65E-44278No hitNo description
SuperFamilySSF554552.88E-34290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2782171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.55787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMVKTLEKY HSCSFGSLKA SQPENESQYN YHEYLRLKAR VEVLQRSQRN LLGEDLAPLN  120
TKELEQLEHQ LETSLRKIRS TKTQSMLNQL AELQRKEQVL AETNKALRNK LEENAQEFPR  180
QMWEANAQTI PYNPLPTHSD EFFQPLGLNT AMHNSFNGLR YNPIGSDEMN VAGVNANNHN  240
GLFPXLDAVA DEMCNPNFSQ GKNKVISCX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-269217122101Developmental protein SEPALLATA 3
4ox0_B5e-269217122101Developmental protein SEPALLATA 3
4ox0_C5e-269217122101Developmental protein SEPALLATA 3
4ox0_D5e-269217122101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022017817.10.0MADS-box protein CMB1-like
RefseqXP_022017819.10.0MADS-box protein CMB1-like
SwissprotQ7Y0401e-106EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A251VF331e-179A0A251VF33_HELAN; Putative MADS-box protein CMB1
STRINGXP_010257958.11e-117(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]