PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 30864.5 Da PI: 6.5112 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.8 | 5.4e-46 | 5 | 122 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107 +Ptd+elv++yL++k++++++ + +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++vg+kk Lv Han005492 5 SPTDDELVMHYLCRKCASQSIAV-PIIAEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--PKAVGIKKALV 101 6*******************999.88***************6666689*************************************98..778******** PP NAM 108 fykgrapkgektdWvmheyrl 128 fy g+ap+g+kt+W+mheyrl Han005492 102 FYAGKAPRGVKTNWIMHEYRL 122 *******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.103 | 1 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-22 | 5 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-55 | 5 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
RGSVSPTDDE LVMHYLCRKC ASQSIAVPII AEIDLYKFDP WQLPDMALYG EKEWYFFSPR 60 DRKYPNGSRP NRAAGTGYWK ATGADKPIGK PKAVGIKKAL VFYAGKAPRG VKTNWIMHEY 120 RLANVDRSAG KRNNNLRLDD WVLCRIYNKK GTLEKHHVTD DHGFDMETET KPNITQNTAT 180 QVVHPPPSSD VAHHVMKDVF HFETSESIPT LHTDSSPEQE VQSDPNGNEF PFSYVDPFQN 240 DDFTPQSQYY NDYQLSPFQD MFMYDAKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-76 | 6 | 155 | 23 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022011426.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-109 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A251S7S2 | 0.0 | A0A251S7S2_HELAN; Putative NAC domain-containing protein | ||||
STRING | EOX92686 | 1e-123 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-111 | NAC family protein |