PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han004579
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family bHLH
Protein Properties Length: 319aa    MW: 35130.6 Da    PI: 6.243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-14155PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15.1e-163584255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Han004579 35 RSKHSVTEQRRRSKINERFQILRDLIPNS----DQKRDTASFLLEVIEYVQYLQ 84
               899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1930105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-2331105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3993383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-153588No hitNo description
PfamPF000102.2E-133584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-123989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKSSKGHQED DYEDYGAKKD TNPSSKDGKN SDATRSKHSV TEQRRRSKIN ERFQILRDLI  60
PNSDQKRDTA SFLLEVIEYV QYLQERVQKY EGSYQGWSAE PTKLMPWRNS HWRVPGFGHP  120
PVIKPDSALT PSYPVRFDEN ASIAPAINTG TPNPTRSDPG GDVNCNMMDS QPELASKMAM  180
PAVQPSIPVP VQQADGTFSH SALHCNVNMQ SSDVPVAGDA NQQEEFTVEG GTISISSAYS  240
QGLLNSLTQA LQNSGVDLTQ ATISVQVDLG KRANRGLASG TSTAKDHENN PHHSNQDVVR  300
FQEFNNGENS DQASKRLKT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976691.10.0transcription factor BIM2
SwissprotQ9CAA46e-90BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A251U3Y60.0A0A251U3Y6_HELAN; Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGXP_002514584.11e-124(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-92BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]